| Literature DB >> 31391968 |
Enis Nadia Md Yusof1,2, Nazhirah Muhammad Nasri1,3, Thahira B S A Ravoof1,4, Mukesh M Jotani5, Edward R T Tiekink6.
Abstract
The title CuII complex, [Entities:
Keywords: Hirshfeld surface analysis; copper; crystal structure; dithiocarbazato
Year: 2019 PMID: 31391968 PMCID: PMC6658952 DOI: 10.1107/S2056989019006145
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I) showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level. Unlabelled atoms are related by the symmetry operation 1 − x, 1 − y, 1 − z.
Selected geometric parameters (Å, °)
| Cu—S1 | 2.1845 (7) | N1—N2 | 1.409 (3) |
| Cu—N2 | 1.923 (2) | C1—N1 | 1.286 (3) |
| C1—S1 | 1.720 (3) | C9—N2 | 1.300 (3) |
| C1—S2 | 1.753 (2) | ||
| S1—Cu—N2 | 85.83 (6) | S1—C1—N1 | 125.08 (19) |
| S1i—Cu—N2 | 94.18 (6) | S2—C1—N1 | 119.9 (2) |
| S1—C1—S2 | 115.03 (15) |
Symmetry code: (i) .
Figure 2Molecular packing in (I): (a) a view of the supramolecular layer sustained by π(chelate ring)–π(furyl) and phenyl-C—H⋯π(phenyl) interactions shown as blue and purple dashed lines, respectively, and (b) a view of the unit-cell contents shown in projection down the b axis highlighting the stacking of layers.
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the (C3–C8) ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C5—H5⋯ | 0.95 | 2.96 | 3.646 (3) | 131 |
Symmetry code: (ii) .
Figure 3A view of the Hirshfeld surface for (I) mapped over d norm in the range −0.080 to +1.213 arbitrary units.
Figure 4A view of the Hirshfeld surface for (I) mapped over the electrostatic potential in the range −0.036 to + 0.034 atomic units.
Summary of short interatomic contacts (Å) in (I)
| Contact | Distance | Symmetry operation |
|---|---|---|
| H8⋯H8 | 2.11 | − |
| H5⋯C4 | 2.66 | − |
| H2 | 2.97 |
|
| C9⋯C11 | 3.364 (4) |
|
Notes: (a) The interatomic distances are calculated in Crystal Explorer (Turner et al., 2017 ▸) whereby the X—H bond lengths are adjusted to their neutron values.
Figure 5A view of the Hirshfeld surface with the shape-index property highlighting C—H⋯π/π⋯H—C contacts by black dotted lines.
Figure 6(a) The full two-dimensional fingerprint plot for (I) and fingerprint plots delineated into (b) H⋯H, (c) C⋯H/H⋯C, (d) S⋯H/H⋯S and (e) C⋯C contacts.
Percentage contributions of interatomic contacts to the Hirshfeld surface for (I)
| Contact | Percentage contribution |
|---|---|
| H⋯H | 36.2 |
| C⋯H/H⋯C | 23.0 |
| S⋯H/H⋯S | 17.5 |
| O⋯H/H⋯O | 5.1 |
| C⋯N/N⋯C | 3.3 |
| S⋯O/O⋯S | 2.9 |
| N⋯H/H⋯N | 2.8 |
| Cu⋯C/C⋯Cu | 2.7 |
| C⋯C | 2.6 |
| C⋯S/S⋯C | 1.3 |
| N⋯S/S⋯N | 1.2 |
| O⋯O | 0.5 |
| N⋯O/O⋯N | 0.3 |
| N⋯N | 0.3 |
| Cu⋯N/N⋯Cu | 0.2 |
| Cu⋯H/H⋯Cu | 0.1 |
| Cu⋯O/O⋯Cu | 0.1 |
Summary of interaction energies (kJ mol−1) calculated for (I)
| Contact |
|
|
|
|
|
|
|---|---|---|---|---|---|---|
| Cu⋯ | ||||||
|
| ||||||
| C9⋯C11i + | ||||||
| S2⋯H2 | 5.02 | −23.2 | −9.4 | −154.4 | 97.6 | −89.7 |
|
| 16.15 | −6.3 | −3.3 | −50.9 | 28.3 | −31.5 |
| S1⋯H11iii | 11.25 | −12.0 | −2.6 | −10.6 | 5.2 | −19.2 |
| C5—H5⋯ | 17.06 | −6.2 | −2.1 | −20.6 | 13.8 | −15.1 |
| H8⋯H8v | 15.35 | 0.7 | −0.9 | −15.6 | 7.9 | −7.5 |
Notes: Symmetry operations: (i) x, −1 + y, z; (ii) −x, 2 − y, 1 − z; (iii) x, − y, + z; (iv) −x, + y, − z; (v) −x, 1 − y, 1 − z.
Figure 7The energy frameworks viewed down the b-axis direction comprising (a) electrostatic potential force, (b) dispersion force and (c) total energy for a cluster about a reference molecule of (I). The energy frameworks were adjusted to the same scale factor of 50 with a cut-off value of 3 kJ mol−1 within 2 × 2 × 2 unit cells.
Experimental details
| Crystal data | |
| Chemical formula | [Cu(C13H11N2OS2)2] |
|
| 614.25 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 15.3515 (7), 5.0151 (3), 16.7186 (8) |
| β (°) | 94.618 (4) |
|
| 1282.98 (11) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 1.21 |
| Crystal size (mm) | 0.30 × 0.20 × 0.10 |
| Data collection | |
| Diffractometer | Agilent Xcalibur Eos Gemini |
| Absorption correction | Multi-scan ( |
|
| 0.744, 1.000 |
| No. of measured, independent and observed [ | 5864, 2898, 2382 |
|
| 0.027 |
| (sin θ/λ)max (Å−1) | 0.677 |
| Refinement | |
|
| 0.040, 0.111, 1.04 |
| No. of reflections | 2898 |
| No. of parameters | 169 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.49, −0.61 |
Computer programs: CrysAlis PRO (Agilent, 2011 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| [Cu(C13H11N2OS2)2] | |
| Monoclinic, | Mo |
| Cell parameters from 1956 reflections | |
| θ = 2.4–28.7° | |
| µ = 1.21 mm−1 | |
| β = 94.618 (4)° | |
| Prism, dark-brown | |
| 0.30 × 0.20 × 0.10 mm |
| Agilent Xcalibur Eos Gemini diffractometer | 2898 independent reflections |
| Radiation source: fine-focus sealed X-ray tube, Enhance (Mo) X-ray Source | 2382 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.1952 pixels mm-1 | θmax = 28.8°, θmin = 2.4° |
| ω scans | |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | |
| 5864 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2898 reflections | (Δ/σ)max < 0.001 |
| 169 parameters | Δρmax = 0.49 e Å−3 |
| 0 restraints | Δρmin = −0.61 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Cu | 0.5000 | 0.5000 | 0.5000 | 0.01942 (15) | |
| S1 | 0.40280 (4) | 0.46830 (15) | 0.39759 (4) | 0.02392 (18) | |
| S2 | 0.22892 (4) | 0.71156 (14) | 0.37681 (4) | 0.02121 (18) | |
| O1 | 0.42829 (12) | 1.2573 (4) | 0.69781 (11) | 0.0240 (4) | |
| N1 | 0.34226 (13) | 0.8207 (4) | 0.49969 (13) | 0.0186 (5) | |
| N2 | 0.42578 (13) | 0.7729 (4) | 0.53831 (13) | 0.0168 (5) | |
| C1 | 0.32893 (16) | 0.6845 (5) | 0.43470 (16) | 0.0185 (5) | |
| C2 | 0.17122 (17) | 0.9561 (6) | 0.43348 (17) | 0.0221 (6) | |
| H2A | 0.1756 | 0.9075 | 0.4911 | 0.027* | |
| H2B | 0.1976 | 1.1347 | 0.4281 | 0.027* | |
| C3 | 0.07652 (17) | 0.9609 (5) | 0.40095 (16) | 0.0192 (6) | |
| C4 | 0.04586 (19) | 1.1481 (6) | 0.34526 (17) | 0.0255 (6) | |
| H4 | 0.0848 | 1.2774 | 0.3268 | 0.031* | |
| C5 | −0.0419 (2) | 1.1495 (6) | 0.31570 (18) | 0.0299 (7) | |
| H5 | −0.0623 | 1.2800 | 0.2775 | 0.036* | |
| C6 | −0.09871 (18) | 0.9637 (6) | 0.34150 (17) | 0.0236 (6) | |
| H6 | −0.1583 | 0.9647 | 0.3212 | 0.028* | |
| C7 | −0.06860 (19) | 0.7743 (6) | 0.39746 (19) | 0.0301 (7) | |
| H7 | −0.1076 | 0.6453 | 0.4160 | 0.036* | |
| C8 | 0.01881 (19) | 0.7741 (6) | 0.42627 (19) | 0.0321 (7) | |
| H8 | 0.0393 | 0.6426 | 0.4642 | 0.039* | |
| C9 | 0.44368 (17) | 0.9293 (6) | 0.59946 (15) | 0.0192 (5) | |
| H9 | 0.4991 | 0.9036 | 0.6280 | 0.023* | |
| C10 | 0.39017 (17) | 1.1365 (5) | 0.62925 (15) | 0.0188 (5) | |
| C11 | 0.37208 (19) | 1.4495 (6) | 0.71860 (17) | 0.0250 (6) | |
| H11 | 0.3819 | 1.5641 | 0.7637 | 0.030* | |
| C12 | 0.30047 (19) | 1.4555 (6) | 0.66655 (17) | 0.0246 (6) | |
| H12 | 0.2518 | 1.5715 | 0.6685 | 0.030* | |
| C13 | 0.31160 (18) | 1.2562 (5) | 0.60850 (17) | 0.0224 (6) | |
| H13 | 0.2721 | 1.2137 | 0.5637 | 0.027* |
| Cu | 0.0141 (2) | 0.0252 (3) | 0.0192 (3) | −0.00134 (18) | 0.00266 (17) | −0.00100 (19) |
| S1 | 0.0163 (3) | 0.0344 (4) | 0.0207 (3) | 0.0034 (3) | −0.0001 (3) | −0.0076 (3) |
| S2 | 0.0153 (3) | 0.0256 (4) | 0.0222 (3) | 0.0000 (3) | −0.0016 (2) | −0.0025 (3) |
| O1 | 0.0217 (10) | 0.0322 (11) | 0.0178 (9) | 0.0049 (8) | 0.0005 (7) | −0.0047 (8) |
| N1 | 0.0126 (10) | 0.0229 (12) | 0.0202 (11) | 0.0010 (9) | 0.0013 (8) | 0.0005 (9) |
| N2 | 0.0106 (10) | 0.0216 (11) | 0.0186 (10) | −0.0031 (8) | 0.0027 (8) | 0.0015 (9) |
| C1 | 0.0140 (12) | 0.0192 (13) | 0.0224 (13) | −0.0040 (10) | 0.0020 (10) | 0.0024 (11) |
| C2 | 0.0168 (13) | 0.0239 (14) | 0.0251 (14) | −0.0007 (11) | −0.0019 (10) | −0.0021 (11) |
| C3 | 0.0163 (12) | 0.0223 (14) | 0.0187 (13) | 0.0023 (10) | −0.0002 (10) | −0.0046 (11) |
| C4 | 0.0253 (14) | 0.0257 (15) | 0.0251 (14) | −0.0018 (12) | −0.0008 (11) | 0.0018 (12) |
| C5 | 0.0298 (16) | 0.0312 (16) | 0.0276 (15) | 0.0017 (13) | −0.0052 (12) | 0.0073 (13) |
| C6 | 0.0195 (13) | 0.0282 (15) | 0.0225 (14) | 0.0060 (11) | −0.0018 (11) | −0.0057 (12) |
| C7 | 0.0193 (14) | 0.0341 (17) | 0.0366 (17) | −0.0021 (12) | 0.0012 (12) | 0.0086 (14) |
| C8 | 0.0232 (14) | 0.0346 (17) | 0.0376 (17) | 0.0006 (13) | −0.0030 (12) | 0.0166 (14) |
| C9 | 0.0137 (12) | 0.0264 (14) | 0.0176 (12) | −0.0014 (10) | 0.0018 (10) | 0.0006 (11) |
| C10 | 0.0184 (12) | 0.0225 (14) | 0.0158 (12) | −0.0050 (11) | 0.0032 (10) | 0.0014 (11) |
| C11 | 0.0291 (15) | 0.0280 (15) | 0.0184 (13) | 0.0017 (12) | 0.0052 (11) | −0.0007 (12) |
| C12 | 0.0231 (14) | 0.0230 (14) | 0.0280 (15) | 0.0028 (11) | 0.0045 (11) | −0.0004 (12) |
| C13 | 0.0211 (13) | 0.0213 (14) | 0.0245 (14) | 0.0000 (11) | −0.0007 (11) | −0.0017 (11) |
| Cu—S1 | 2.1845 (7) | C4—C5 | 1.397 (4) |
| Cu—N2 | 1.923 (2) | C4—H4 | 0.9500 |
| Cu—N2i | 1.923 (2) | C5—C6 | 1.369 (4) |
| Cu—S1i | 2.1845 (7) | C5—H5 | 0.9500 |
| C1—S1 | 1.720 (3) | C6—C7 | 1.386 (4) |
| C1—S2 | 1.753 (2) | C6—H6 | 0.9500 |
| S2—C2 | 1.823 (3) | C7—C8 | 1.389 (4) |
| O1—C11 | 1.358 (3) | C7—H7 | 0.9500 |
| O1—C10 | 1.384 (3) | C8—H8 | 0.9500 |
| N1—N2 | 1.409 (3) | C9—C10 | 1.438 (4) |
| C1—N1 | 1.286 (3) | C9—H9 | 0.9500 |
| C9—N2 | 1.300 (3) | C10—C13 | 1.367 (4) |
| C2—C3 | 1.511 (3) | C11—C12 | 1.346 (4) |
| C2—H2A | 0.9900 | C11—H11 | 0.9500 |
| C2—H2B | 0.9900 | C12—C13 | 1.413 (4) |
| C3—C8 | 1.379 (4) | C12—H12 | 0.9500 |
| C3—C4 | 1.378 (4) | C13—H13 | 0.9500 |
| N2—Cu—N2i | 180.00 (11) | C6—C5—C4 | 120.4 (3) |
| S1—Cu—N2 | 85.83 (6) | C6—C5—H5 | 119.8 |
| N2i—Cu—S1 | 94.17 (6) | C4—C5—H5 | 119.8 |
| S1i—Cu—N2 | 94.18 (6) | C5—C6—C7 | 119.5 (3) |
| N2i—Cu—S1i | 85.82 (6) | C5—C6—H6 | 120.2 |
| S1—Cu—S1i | 180.0 | C7—C6—H6 | 120.2 |
| C1—S1—Cu | 95.74 (9) | C6—C7—C8 | 119.7 (3) |
| C1—S2—C2 | 101.88 (12) | C6—C7—H7 | 120.2 |
| C11—O1—C10 | 106.7 (2) | C8—C7—H7 | 120.2 |
| C1—N1—N2 | 112.0 (2) | C3—C8—C7 | 121.3 (3) |
| C9—N2—N1 | 112.6 (2) | C3—C8—H8 | 119.4 |
| C9—N2—Cu | 126.72 (18) | C7—C8—H8 | 119.4 |
| N1—N2—Cu | 120.67 (16) | N2—C9—C10 | 128.2 (2) |
| S1—C1—S2 | 115.03 (15) | N2—C9—H9 | 115.9 |
| S1—C1—N1 | 125.08 (19) | C10—C9—H9 | 115.9 |
| S2—C1—N1 | 119.9 (2) | C13—C10—O1 | 108.9 (2) |
| C3—C2—S2 | 108.50 (18) | C13—C10—C9 | 138.3 (2) |
| C3—C2—H2A | 110.0 | O1—C10—C9 | 112.8 (2) |
| S2—C2—H2A | 110.0 | C12—C11—O1 | 110.7 (2) |
| C3—C2—H2B | 110.0 | C12—C11—H11 | 124.7 |
| S2—C2—H2B | 110.0 | O1—C11—H11 | 124.7 |
| H2A—C2—H2B | 108.4 | C11—C12—C13 | 106.9 (3) |
| C8—C3—C4 | 118.5 (3) | C11—C12—H12 | 126.6 |
| C8—C3—C2 | 120.1 (2) | C13—C12—H12 | 126.6 |
| C4—C3—C2 | 121.4 (3) | C10—C13—C12 | 106.8 (2) |
| C3—C4—C5 | 120.6 (3) | C10—C13—H13 | 126.6 |
| C3—C4—H4 | 119.7 | C12—C13—H13 | 126.6 |
| C5—C4—H4 | 119.7 | ||
| C1—N1—N2—C9 | 173.3 (2) | C5—C6—C7—C8 | −0.4 (5) |
| C1—N1—N2—Cu | −6.9 (3) | C4—C3—C8—C7 | −0.7 (5) |
| N2—N1—C1—S1 | 0.0 (3) | C2—C3—C8—C7 | 179.9 (3) |
| N2—N1—C1—S2 | 179.76 (17) | C6—C7—C8—C3 | 0.7 (5) |
| Cu—S1—C1—N1 | 5.3 (2) | N1—N2—C9—C10 | −0.8 (4) |
| Cu—S1—C1—S2 | −174.52 (13) | Cu—N2—C9—C10 | 179.4 (2) |
| C2—S2—C1—N1 | 1.1 (3) | C11—O1—C10—C13 | 0.4 (3) |
| C2—S2—C1—S1 | −179.07 (15) | C11—O1—C10—C9 | 179.1 (2) |
| C1—S2—C2—C3 | −168.47 (19) | N2—C9—C10—C13 | −4.3 (6) |
| S2—C2—C3—C8 | 82.6 (3) | N2—C9—C10—O1 | 177.5 (2) |
| S2—C2—C3—C4 | −96.8 (3) | C10—O1—C11—C12 | 0.0 (3) |
| C8—C3—C4—C5 | 0.5 (4) | O1—C11—C12—C13 | −0.4 (3) |
| C2—C3—C4—C5 | 179.9 (3) | O1—C10—C13—C12 | −0.6 (3) |
| C3—C4—C5—C6 | −0.2 (5) | C9—C10—C13—C12 | −178.8 (3) |
| C4—C5—C6—C7 | 0.2 (5) | C11—C12—C13—C10 | 0.6 (3) |
| H··· | ||||
| C5—H5··· | 0.95 | 2.96 | 3.646 (3) | 131 |