| Literature DB >> 31384838 |
Essam M Hussein1,2, Munirah M Al-Rooqi1, Shimaa M Abd El-Galil3, Saleh A Ahmed1,2.
Abstract
BACKGROUND: Sulfonamide derivatives are of great attention due to their wide spectrum of biological activities. Sulfonamides conjugated with acetamide fragments exhibit antimicrobial and anticancer activities. The inhibition dihydrofolate reductase (DHFR) is considered as one of the most prominent mechanism though which sulfonamide derivatives exhibits antimicrobial and antitumor activities.Entities:
Keywords: Acetamides; Anticancer; Antimicrobial; DHFR inhibitors; Molecular docking; Structure–activity relationship (SAR); Sulfonamide
Year: 2019 PMID: 31384838 PMCID: PMC6661844 DOI: 10.1186/s13065-019-0603-x
Source DB: PubMed Journal: BMC Chem ISSN: 2661-801X
Fig. 1Structural elements of DHFR inhibitors in the DHFR enzymatic active site
Scheme 1Synthesis of novel N-substituted sulfonamide derivatives 5a–p and 6a–p
Antimicrobial activity of newly synthesized compounds
| Comp. no. | Gram (+ve) bacteria | Gram (−ve) bacteria | Fungi | |||
|---|---|---|---|---|---|---|
|
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|
|
|
| |
|
| 20 | 22 | 20 | 10 | – | – |
|
| 18 | 15 | 16 | 12 | – | – |
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| 19 | 24 | 23 | 14 | – | – |
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| 22 | 20 | 19 | 16 | – | – |
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| 23 | 19 | 15 | 17 | – | – |
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| 21 | 24 | 14 | 16 | – | – |
|
| 20 | 25 | 14 | 18 | – | – |
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| 26 | 20 | 21 | 20 | 25 | – |
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| 12 | 11 | 15 | 13 | – | – |
|
| 15 | 17 | 12 | – | – | – |
|
| 15 | 12 | 17 | 15 | – | – |
|
| 14 | 25 | 14 | 10 | – | – |
|
| 16 | 18 | 16 | 11 | – | – |
|
| 15 | 22 | 14 | 10 | 17 | 11 |
|
| 13 | 21 | 16 | – | – | – |
|
| 19 | 23 | 20 | 14 | 30 | 13 |
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| 17 | 22 | 15 | 19 | 30 | 22 |
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| 16 | 12 | 13 | 14 | 21 | 15 |
|
| 15 | 14 | 16 | 13 | 20 | 14 |
|
| 13 | 17 | 15 | 16 | 17 | 22 |
|
| 12 | 15 | 12 | 15 | 15 | 14 |
|
| 13 | 15 | 13 | 16 | 19 | 12 |
|
| – | – | – | – | – | – |
|
| 20 | 17 | 18 | 19 | 20 | 22 |
|
| 14 | 20 | 15 | 12 | 35 | 15 |
|
| 18 | 16 | 13 | 15 | 33 | – |
|
| 16 | 23 | 17 | 14 | 33 | 23 |
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| 20 | 25 | 20 | 16 | 32 | 26 |
|
| 17 | 19 | 12 | 13 | 27 | 12 |
|
| 16 | 25 | 14 | 25 | 30 | 14 |
|
| – | – | – | – | – | – |
|
| 20 | 22 | 20 | 17 | 38 | 15 |
| Sta | 24 | 26 | 30 | 25 | 17 | 20 |
Mean zone of inhibition in mm ± standard deviation (S.D.)
— No activity
aReference controls for the microorganisms are “Gentamycin” (for the Gram +ve and Gram −ve bacteria), and “Ketoconazol” for Fungi
Fig. 2Comparison of the antimicrobial activity of the newly synthesized compounds
In vitro anticancer screening of the synthesized compounds against human lung carcinoma cell line (A-549)
| Comp. no. | Validity for sample conc. | IC50 (μg mL−1)a | IC50 (μM)a | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 500 | 250 | 125 | 62.50 | 31.25 | 15.60 | 7.80 | 3.90 | 2 | 1 | 0 | |||
|
| 5.19 | 11.84 | 25.06 | 37.15 | 48.91 | 62.87 | 80.96 | 91.43 | 97.02 | 100 | 100 | 29.90 | 80.06 |
|
| 5.38 | 11.97 | 24.02 | 36.59 | 47.38 | 63.20 | 78.15 | 87.56 | 94.03 | 98.76 | 100 | 28.60 | 70.88 |
|
| 4.31 | 8.65 | 16.37 | 28.74 | 40.96 | 58.71 | 73.04 | 89.21 | 96.28 | 100 | 100 | 23.20 | 59.87 |
|
| 2.65 | 5.34 | 10.26 | 19.45 | 28.73 | 39.04 | 57.26 | 71.89 | 85.22 | 92.34 | 100 | 10.90 | 26.72 |
|
| 2.94 | 6.71 | 14.09 | 23.87 | 36.29 | 49.85 | 70.63 | 89.24 | 96.31 | 99.72 | 100 | 15.50 | 34.26 |
|
| 4.23 | 9.86 | 20.15 | 32.76 | 45.13 | 59.38 | 75.04 | 82.38 | 91.75 | 97.43 | 100 | 25.80 | 57.91 |
|
| 2.75 | 6.39 | 10.42 | 18.65 | 28.91 | 40.74 | 56.26 | 70.89 | 83.11 | 88.62 | 100 | 10.90 | 26.11 |
|
| 2.86 | 5.43 | 12.87 | 22.96 | 34.53 | 47.28 | 65.39 | 80.72 | 89.86 | 97.13 | 100 | 14.40 | 34.41 |
|
| 4.73 | 10.59 | 18.42 | 28.96 | 40.67 | 59.23 | 73.18 | 85.21 | 92.74 | 97.35 | 100 | 23.30 | 62.06 |
|
| 2.98 | 6.74 | 10.85 | 19.73 | 26.8 | 37.28 | 49.06 | 70.31 | 84.15 | 91.38 | 100 | 7.60 | 18.74 |
|
| 8.92 | 16.34 | 24.08 | 35.17 | 49.01 | 72.38 | 89.42 | 98.36 | 100 | 100 | 100 | 30.50 | 78.31 |
|
| 1.89 | 4.37 | 8.76 | 19.04 | 30.63 | 43.86 | 59.12 | 76.44 | 90.63 | 96.42 | 100 | 12.40 | 30.25 |
|
| 6.72 | 10.86 | 22.38 | 31.49 | 46.75 | 69.42 | 86.03 | 92.34 | 99.71 | 100 | 100 | 28.90 | 63.61 |
|
| 4.86 | 9.73 | 19.48 | 31.72 | 45.29 | 64.18 | 80.63 | 92.34 | 97.23 | 100 | 100 | 27.30 | 61.00 |
|
| 2.89 | 6.54 | 15.93 | 24.06 | 36.41 | 52.97 | 68.02 | 79.19 | 91.42 | 98.76 | 100 | 18.30 | 43.63 |
|
| 3.69 | 8.71 | 18.63 | 29.46 | 41.87 | 54.06 | 71.32 | 87.14 | 95.20 | 99.73 | 100 | 20.70 | 49.23 |
|
| 3.65 | 8.29 | 16.34 | 25.87 | 37.06 | 46.92 | 58.43 | 80.71 | 87.53 | 93.14 | 100 | 13.50 | 36.15 |
|
| 6.14 | 13.65 | 25.38 | 37.25 | 56.41 | 79.84 | 92.36 | 98.6 | 100 | 100 | 100 | 41.70 | 103.35 |
|
| 3.74 | 7.46 | 15.28 | 27.4 | 41.35 | 56.79 | 68.42 | 82.37 | 91.43 | 97.60 | 100 | 22.40 | 57.81 |
|
| 4.08 | 6.82 | 11.43 | 19.46 | 30.67 | 43.20 | 59.13 | 71.44 | 85.12 | 92.37 | 100 | 12.20 | 29.91 |
|
| 4.62 | 11.29 | 20.47 | 34.13 | 45.29 | 62.37 | 80.94 | 89.76 | 97.02 | 100 | 100 | 26.80 | 59.24 |
|
| 6.31 | 13.45 | 19.75 | 31.42 | 47.23 | 71.94 | 89.56 | 97.13 | 100 | 100 | 100 | 29.40 | 65.99 |
|
| 9.56 | 21.87 | 30.64 | 43.19 | 59.46 | 78.28 | 91.40 | 98.76 | 100 | 100 | 100 | 49.40 | 118.33 |
|
| 1.98 | 4.87 | 9.72 | 19.93 | 28.61 | 40.72 | 63.18 | 79.43 | 90.64 | 97.39 | 100 | 12.30 | 29.39 |
|
| 7.94 | 11.52 | 24.43 | 36.25 | 49.72 | 71.49 | 89.70 | 97.41 | 100 | 100 | 100 | 30.90 | 82.30 |
|
| 3.87 | 7.96 | 16.20 | 27.85 | 41.79 | 54.03 | 71.48 | 88.60 | 96.23 | 100 | 100 | 20.70 | 51.05 |
|
| 7.18 | 12.98 | 23.06 | 33.97 | 47.85 | 63.28 | 78.91 | 90.68 | 97.89 | 100 | 100 | 29.00 | 74.46 |
|
| 6.74 | 14.35 | 21.88 | 35.46 | 46.29 | 58.17 | 78.03 | 86.36 | 94.12 | 98.78 | 100 | 26.30 | 64.16 |
|
| 4.28 | 9.53 | 18.75 | 31.92 | 40.06 | 47.41 | 73.65 | 90.37 | 98.91 | 100 | 100 | 14.80 | 32.57 |
|
| 11.82 | 23.48 | 30.51 | 41.3 | 47.42 | 60.31 | 82.42 | 97.14 | 100 | 100 | 100 | 28.07 | 62.72 |
|
| 31.96 | 49.72 | 73.68 | 90.63 | 97.46 | 100 | 100 | 100 | 100 | 100 | 100 | 248.00 | 591.25 |
|
| 2.79 | 6.28 | 13.91 | 25.04 | 37.18 | 52.94 | 68.29 | 84.67 | 92.84 | 98.25 | 100 | 18.50 | 44.00 |
| 5-FU | 10.28 | 19.45 | 25.39 | 39.48 | 57.21 | 70.82 | 86.19 | 94.36 | 99.25 | 100 | 100 | 43.9 | 337.48 |
IC50 value: concentration causing 50% inhibition of cell viability
aMean of three results obtained from three experiments
In vitro anticancer screening of the synthesized compounds against human breast carcinoma cell line (MCF-7)
| Comp. no. | Validity for sample conc. | IC50 (μg mL−1)a | IC50 (μM)a | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 500 | 250 | 125 | 62.50 | 31.25 | 15.60 | 7.80 | 3.90 | 2 | 1 | 0 | |||
|
| 7.34 | 14.03 | 29.47 | 41.58 | 54.29 | 71.43 | 87.50 | 96.75 | 100 | 100 | 100 | 41.80 | 111.92 |
|
| 7.13 | 13.42 | 30.96 | 42.37 | 56.29 | 68.41 | 83.77 | 91.40 | 98.32 | 100 | 100 | 45.40 | 112.52 |
|
| 5.28 | 11.32 | 20.79 | 32.65 | 48.51 | 70.38 | 86.42 | 94.03 | 99.71 | 100 | 100 | 30.10 | 77.68 |
|
| 3.46 | 7.28 | 15.09 | 27.41 | 36.27 | 45.62 | 63.18 | 80.94 | 93.46 | 99.53 | 100 | 13.70 | 33.59 |
|
| 4.02 | 9.56 | 18.48 | 29.67 | 40.82 | 54.61 | 73.28 | 91.42 | 98.70 | 100 | 100 | 20.80 | 45.98 |
|
| 6.17 | 14.38 | 27.56 | 39.4 | 53.29 | 68.43 | 81.70 | 93.68 | 99.85 | 100 | 100 | 38.70 | 86.86 |
|
| 3.86 | 8.24 | 15.37 | 24.16 | 32.95 | 41.68 | 49.80 | 67.48 | 85.26 | 93.84 | 100 | 7.76 | 18.59 |
|
| 3.94 | 7.81 | 16.23 | 31.42 | 39.79 | 48.20 | 67.41 | 82.76 | 91.30 | 98.72 | 100 | 14.90 | 35.61 |
|
| 6.28 | 13.47 | 25.13 | 36.78 | 48.50 | 67.41 | 81.67 | 89.43 | 98.16 | 100 | 100 | 30.00 | 79.91 |
|
| 4.17 | 9.82 | 18.78 | 27.05 | 35.23 | 46.19 | 54.82 | 69.46 | 87.34 | 94.29 | 100 | 12.10 | 29.84 |
|
| 13.49 | 21.86 | 32.75 | 46.23 | 57.18 | 76.94 | 88.60 | 97.41 | 100 | 100 | 100 | 51.70 | 132.74 |
|
| 2.73 | 6.46 | 11.38 | 24.95 | 34.89 | 42.67 | 51.53 | 65.76 | 83.20 | 91.42 | 100 | 9.140 | 22.30 |
|
| 9.85 | 18.2 | 30.67 | 42.96 | 51.78 | 68.92 | 84.68 | 95.41 | 99.62 | 100 | 100 | 37.50 | 82.54 |
|
| 7.63 | 15.26 | 27.39 | 38.04 | 46.15 | 58.20 | 71.36 | 88.42 | 96.28 | 100 | 100 | 26.20 | 58.55 |
|
| 3.46 | 9.82 | 20.31 | 29.57 | 43.60 | 56.89 | 70.42 | 83.97 | 92.40 | 97.36 | 100 | 23.60 | 56.26 |
|
| 4.98 | 11.75 | 21.42 | 36.75 | 50.38 | 69.41 | 85.26 | 93.02 | 99.76 | 100 | 100 | 32.10 | 76.35 |
|
| 4.94 | 10.73 | 23.4 | 32.79 | 45.17 | 56.24 | 71.38 | 85.02 | 92.47 | 98.25 | 100 | 24.40 | 65.33 |
|
| 8.71 | 20.42 | 37.53 | 49.81 | 62.97 | 85.46 | 93.04 | 99.32 | 100 | 100 | 100 | 62.00 | 153.66 |
|
| 5.31 | 9.14 | 19.56 | 32.71 | 49.82 | 70.38 | 81.6 | 92.88 | 98.76 | 100 | 100 | 31.10 | 80.26 |
|
| 6.79 | 13.4 | 19.85 | 27.93 | 36.7 | 48.61 | 63.87 | 76.45 | 88.29 | 96.36 | 100 | 14.90 | 36.53 |
|
| 7.46 | 19.53 | 28.65 | 40.37 | 52.91 | 69.42 | 82.36 | 91.73 | 98.6 | 100 | 100 | 38.50 | 85.11 |
|
| 9.56 | 17.28 | 28.67 | 36.7 | 50.98 | 67.39 | 82.15 | 93.69 | 98.72 | 100 | 100 | 33.40 | 74.97 |
|
| 15.68 | 27.83 | 38.17 | 52.46 | 69.9 | 83.51 | 92.78 | 99.52 | 100 | 100 | 100 | 73.30 | 175.58 |
|
| 2.37 | 7.54 | 15.18 | 23.65 | 34.89 | 45.13 | 60.97 | 75.86 | 87.41 | 95.64 | 100 | 13.20 | 31.54 |
|
| 11.76 | 21.49 | 34.85 | 43.96 | 58.28 | 77.39 | 91.47 | 97.92 | 100 | 100 | 100 | 49.30 | 131.31 |
|
| 5.92 | 11.48 | 23.69 | 34.73 | 47.21 | 68.46 | 80.93 | 92.64 | 98.23 | 100 | 100 | 29.14 | 71.87 |
|
| 12.41 | 20.53 | 30.78 | 39.62 | 56.34 | 71.48 | 86.24 | 98.4 | 100 | 100 | 100 | 43.00 | 110.41 |
|
| 10.32 | 19.67 | 32.94 | 41.78 | 51.85 | 65.04 | 79.12 | 90.65 | 97.54 | 100 | 100 | 36.90 | 90.02 |
|
| 7.64 | 16.29 | 24.31 | 35.17 | 45.04 | 56.28 | 69.46 | 82.78 | 94.13 | 99.2 | 100 | 24.30 | 53.48 |
|
| 19.47 | 31.85 | 40.91 | 49.76 | 58.49 | 71.32 | 86.95 | 97.81 | 100 | 100 | 100 | 61.60 | 137.65 |
|
| 37.04 | 52.31 | 76.45 | 91.32 | 98.74 | 100 | 100 | 100 | 100 | 100 | 100 | 287.00 | 684.23 |
|
| 3.45 | 9.74 | 20.37 | 31.96 | 46.29 | 70.34 | 85.21 | 93.18 | 99.4 | 100 | 100 | 28.70 | 68.26 |
| 5-FU | 9.18 | 17.84 | 28.01 | 35.39 | 47.13 | 60.35 | 71.82 | 86.97 | 95.23 | 98.12 | 100 | 27.80 | 213.71 |
IC50 value: concentration causing 50% inhibition of cell viability
aMean of three results obtained from three experiments
Fig. 3Comparison of cytotoxic activity of the tested compounds against (A-549) and (MCF-7) cell lines
Score energy of the tested compounds 5a–p and 6a–p
| Comp. no. | Score | E_conf | E_place | E_score1 | E_score2 | E_refine |
|---|---|---|---|---|---|---|
|
| − 5.0541 | 26.6140 | − 31.9343 | − 6.5932 | − 5.0541 | − 24.1143 |
|
| − 5.3652 | 15.3242 | − 38.0154 | − 6.0735 | − 5.3652 | − 26.8906 |
|
| − 5.7501 | 17.6782 | − 22.8678 | − 6.5044 | − 5.7501 | − 30.5432 |
|
| − 5.6540 | 24.5859 | − 31.2672 | − 6.5266 | − 5.6540 | − 27.5442 |
|
| − 5.3288 | 23.5121 | − 39.4718 | − 6.5074 | − 5.3288 | − 27.0244 |
|
| − 5.6103 | 33.4059 | − 20.9497 | − 6.4211 | − 5.6103 | − 29.1261 |
|
| − 5.1856 | − 42.3167 | − 22.2309 | − 6.4648 | − 5.1856 | − 24.4937 |
|
| − 5.0568 | 49.2723 | − 4.9075 | − 5.7500 | − 5.0568 | − 23.4996 |
|
| − 5.2712 | 59.3063 | − 22.4680 | − 5.4465 | − 5.2712 | − 24.9909 |
|
| − 5.5618 | 48.5778 | − 27.9431 | − 6.3215 | − 5.5618 | − 28.8293 |
|
| − 5.1599 | 55.1210 | − 25.0222 | − 6.7661 | − 5.1599 | − 25.1400 |
|
| − 5.4680 | 52.7716 | − 29.2492 | − 6.7614 | − 5.4680 | − 27.0499 |
|
| − 5.4962 | 54.0440 | − 28.8482 | − 5.9473 | − 5.4962 | − 27.2928 |
|
| − 5.3468 | 71.7895 | − 10.6748 | − 5.9170 | − 5.3468 | − 25.8020 |
|
| − 5.4772 | − 8.5979 | − 36.7758 | − 6.7380 | − 5.4772 | − 29.3019 |
|
| − 5.8154 | 93.6886 | − 29.1507 | − 6.7008 | − 5.8154 | − 27.9044 |
|
| − 5.3059 | 28.9177 | − 33.5175 | − 6.5957 | − 5.3059 | − 25.2110 |
|
| − 5.5940 | 26.3542 | − 40.3486 | − 7.4533 | − 5.5940 | − 27.7459 |
|
| − 5.6364 | 21.9008 | − 5.0259 | − 6.0110 | − 5.6364 | − 26.9364 |
|
| − 5.3646 | 22.8002 | − 5.5670 | − 6.3649 | − 5.3646 | − 27.1061 |
|
| − 5.3159 | 23.2172 | − 28.6743 | − 6.2439 | − 5.3159 | − 26.9349 |
|
| − 5.6478 | 35.7362 | − 29.6484 | − 6.7947 | − 5.6478 | − 28.8622 |
|
| − 5.1935 | − 37.9832 | − 17.5087 | − 4.9311 | − 5.1935 | − 26.2035 |
|
| − 5.1168 | 54.5965 | − 35.3328 | − 7.2622 | − 5.1168 | − 24.2974 |
|
| − 5.3603 | 64.5399 | − 47.4900 | − 6.8921 | − 5.3603 | − 26.9684 |
|
| − 5.1249 | 55.1297 | − 29.5479 | − 6.4586 | − 5.1249 | − 25.9026 |
|
| − 5.5741 | 58.0647 | − 33.7004 | − 6.4011 | − 5.5741 | − 29.5841 |
|
| − 5.5626 | 61.7654 | − 25.5315 | − 6.9615 | − 5.5626 | − 30.0500 |
|
| − 5.5923 | 61.2420 | − 21.5826 | − 6.5719 | − 5.5923 | − 29.0718 |
|
| − 5.9759 | 67.6646 | − 8.4886 | − 6.9574 | − 5.9759 | − 32.6043 |
|
| − 4.8847 | − 4.0898 | − 9.1947 | − 5.7962 | − 4.8847 | − 21.8406 |
|
| − 5.5982 | 96.4896 | − 35.1380 | − 7.6471 | − 5.5982 | − 28.5998 |
Score lower scores shows more poses that are favorable. The unit is kcal mol−1; E-conf indicate the energy of the conformer; E-place score from the placement stage; E-score 1 score from the first rescoring stage; E-score 2 score from the second rescoring stage; E-refine score from the refinement stage
Fig. 4The docking score energy of the tested synthesized compounds
Fig. 5Docking of (5-FU) into DHFR
Fig. 6Docking of compounds 5g, 5j, 6d and 6h into DHFR