Literature DB >> 31384013

Tundra microbial community taxa and traits predict decomposition parameters of stable, old soil organic carbon.

Lauren Hale1,2,3, Wenting Feng2,4, Huaqun Yin1,5, Xue Guo1,2,6, Xishu Zhou1,2,5, Rosvel Bracho7,8, Elaine Pegoraro7,9, C Ryan Penton10,11, Liyou Wu1,2, James Cole12, Konstantinos T Konstantinidis13, Yiqi Luo2,9, James M Tiedje12, Edward A G Schuur7,9, Jizhong Zhou14,15,16,17.   

Abstract

The susceptibility of soil organic carbon (SOC) in tundra to microbial decomposition under warmer climate scenarios potentially threatens a massive positive feedback to climate change, but the underlying mechanisms of stable SOC decomposition remain elusive. Herein, Alaskan tundra soils from three depths (a fibric O horizon with litter and course roots, an O horizon with decomposing litter and roots, and a mineral-organic mix, laying just above the permafrost) were incubated. Resulting respiration data were assimilated into a 3-pool model to derive decomposition kinetic parameters for fast, slow, and passive SOC pools. Bacterial, archaeal, and fungal taxa and microbial functional genes were profiled throughout the 3-year incubation. Correlation analyses and a Random Forest approach revealed associations between model parameters and microbial community profiles, taxa, and traits. There were more associations between the microbial community data and the SOC decomposition parameters of slow and passive SOC pools than those of the fast SOC pool. Also, microbial community profiles were better predictors of model parameters in deeper soils, which had higher mineral contents and relatively greater quantities of old SOC than in surface soils. Overall, our analyses revealed the functional potential of microbial communities to decompose tundra SOC through a suite of specialized genes and taxa. These results portray divergent strategies by which microbial communities access SOC pools across varying depths, lending mechanistic insights into the vulnerability of what is considered stable SOC in tundra regions.

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Year:  2019        PMID: 31384013      PMCID: PMC6863828          DOI: 10.1038/s41396-019-0485-x

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  32 in total

Review 1.  Climate change and the permafrost carbon feedback.

Authors:  E A G Schuur; A D McGuire; C Schädel; G Grosse; J W Harden; D J Hayes; G Hugelius; C D Koven; P Kuhry; D M Lawrence; S M Natali; D Olefeldt; V E Romanovsky; K Schaefer; M R Turetsky; C C Treat; J E Vonk
Journal:  Nature       Date:  2015-04-09       Impact factor: 49.962

2.  Tundra ecosystems observed to be CO2 sources due to differential amplification of the carbon cycle.

Authors:  E F Belshe; E A G Schuur; B M Bolker
Journal:  Ecol Lett       Date:  2013-08-19       Impact factor: 9.492

3.  Bioavailability of soil organic matter and microbial community dynamics upon permafrost thaw.

Authors:  Marco J L Coolen; Jeroen van de Giessen; Elizabeth Y Zhu; Cornelia Wuchter
Journal:  Environ Microbiol       Date:  2011-05-09       Impact factor: 5.491

4.  Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates.

Authors:  Oliver Müller; Toke Bang-Andreasen; Richard Allen White; Bo Elberling; Neslihan Taş; Timothy Kneafsey; Janet K Jansson; Lise Øvreås
Journal:  Environ Microbiol       Date:  2018-07-29       Impact factor: 5.491

5.  Temperature sensitivity of soil respiration rates enhanced by microbial community response.

Authors:  Kristiina Karhu; Marc D Auffret; Jennifer A J Dungait; David W Hopkins; James I Prosser; Brajesh K Singh; Jens-Arne Subke; Philip A Wookey; Göran I Agren; Maria-Teresa Sebastià; Fabrice Gouriveau; Göran Bergkvist; Patrick Meir; Andrew T Nottingham; Norma Salinas; Iain P Hartley
Journal:  Nature       Date:  2014-09-04       Impact factor: 49.962

Review 6.  The subzero microbiome: microbial activity in frozen and thawing soils.

Authors:  Mrinalini P Nikrad; Lee J Kerkhof; Max M Häggblom
Journal:  FEMS Microbiol Ecol       Date:  2016-04-21       Impact factor: 4.194

7.  DNA recovery from soils of diverse composition.

Authors:  J Zhou; M A Bruns; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  1996-02       Impact factor: 4.792

8.  Microbial functional potential and community composition in permafrost-affected soils of the NW Canadian Arctic.

Authors:  Béatrice A Frank-Fahle; Etienne Yergeau; Charles W Greer; Hugues Lantuit; Dirk Wagner
Journal:  PLoS One       Date:  2014-01-08       Impact factor: 3.240

9.  Temperature mediates continental-scale diversity of microbes in forest soils.

Authors:  Jizhong Zhou; Ye Deng; Lina Shen; Chongqing Wen; Qingyun Yan; Daliang Ning; Yujia Qin; Kai Xue; Liyou Wu; Zhili He; James W Voordeckers; Joy D Van Nostrand; Vanessa Buzzard; Sean T Michaletz; Brian J Enquist; Michael D Weiser; Michael Kaspari; Robert Waide; Yunfeng Yang; James H Brown
Journal:  Nat Commun       Date:  2016-07-05       Impact factor: 14.919

10.  Landscape topography structures the soil microbiome in arctic polygonal tundra.

Authors:  Neslihan Taş; Emmanuel Prestat; Shi Wang; Yuxin Wu; Craig Ulrich; Timothy Kneafsey; Susannah G Tringe; Margaret S Torn; Susan S Hubbard; Janet K Jansson
Journal:  Nat Commun       Date:  2018-02-22       Impact factor: 14.919

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  4 in total

1.  Reduced microbial stability in the active layer is associated with carbon loss under alpine permafrost degradation.

Authors:  Ming-Hui Wu; Sheng-Yun Chen; Jian-Wei Chen; Kai Xue; Shi-Long Chen; Xiao-Ming Wang; Tuo Chen; Shi-Chang Kang; Jun-Peng Rui; Janice E Thies; Richard D Bardgett; Yan-Fen Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-22       Impact factor: 11.205

Review 2.  Unboxing the black box-one step forward to understand the soil microbiome: A systematic review.

Authors:  Apurva Mishra; Lal Singh; Dharmesh Singh
Journal:  Microb Ecol       Date:  2022-02-02       Impact factor: 4.552

3.  Winter warming in Alaska accelerates lignin decomposition contributed by Proteobacteria.

Authors:  Xuanyu Tao; Jiajie Feng; Yunfeng Yang; Gangsheng Wang; Renmao Tian; Fenliang Fan; Daliang Ning; Colin T Bates; Lauren Hale; Mengting M Yuan; Linwei Wu; Qun Gao; Jiesi Lei; Edward A G Schuur; Julian Yu; Rosvel Bracho; Yiqi Luo; Konstantinos T Konstantinidis; Eric R Johnston; James R Cole; C Ryan Penton; James M Tiedje; Jizhong Zhou
Journal:  Microbiome       Date:  2020-06-05       Impact factor: 14.650

4.  Long-Term Compost Amendment Spurs Cellulose Decomposition by Driving Shifts in Fungal Community Composition and Promoting Fungal Diversity and Phylogenetic Relatedness.

Authors:  Yuncai Miao; Junjie Li; Ye Li; Yuhui Niu; Tiehu He; Deyan Liu; Weixin Ding
Journal:  mBio       Date:  2022-05-02       Impact factor: 7.786

  4 in total

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