Literature DB >> 35112151

Unboxing the black box-one step forward to understand the soil microbiome: A systematic review.

Apurva Mishra1,2, Lal Singh2, Dharmesh Singh3.   

Abstract

Soil is one of the most important assets of the planet Earth, responsible for maintaining the biodiversity and managing the ecosystem services for both managed and natural ecosystems. It encompasses large proportion of microscopic biodiversity, including prokaryotes and the microscopic eukaryotes. Soil microbiome is critical in managing the soil functions, but their activities have diminutive recognition in few systems like desert land and forest ecosystems. Soil microbiome is highly dependent on abiotic and biotic factors like pH, carbon content, soil structure, texture, and vegetation, but it can notably vary with ecosystems and the respective inhabitants. Thus, unboxing this black box is essential to comprehend the basic components adding to the soil systems and supported ecosystem services. Recent advancements in the field of molecular microbial ecology have delivered commanding tools to examine this genetic trove of soil biodiversity. Objective of this review is to provide a critical evaluation of the work on the soil microbiome, especially since the advent of the NGS techniques. The review also focuses on advances in our understanding of soil communities, their interactions, and functional capabilities along with understanding their role in maneuvering the biogeochemical cycle while underlining and tapping the unprecedented metagenomics data to infer the ecological attributes of yet undiscovered soil microbiome. This review focuses key research directions that could shape the future of basic and applied research into the soil microbiome. This review has led us to understand that it is difficult to generalize that soil microbiome plays a substantiated role in shaping the soil networks and it is indeed a vital resource for sustaining the ecosystem functioning. Exploring soil microbiome will help in unlocking their roles in various soil network. It could be resourceful in exploring and forecasting its impacts on soil systems and for dealing with alleviating problems like rapid climate change.
© 2022. The Author(s).

Entities:  

Keywords:  Climate change; Nutrient cycling; Soil biodiversity; Soil microbiome; Soil networks

Year:  2022        PMID: 35112151     DOI: 10.1007/s00248-022-01962-5

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  67 in total

1.  Determinants of Soil Microbial Communities: Effects of Agricultural Management, Season, and Soil Type on Phospholipid Fatty Acid Profiles

Authors: 
Journal:  Microb Ecol       Date:  1998-07       Impact factor: 4.552

2.  Structure and function of the global topsoil microbiome.

Authors:  Mohammad Bahram; Falk Hildebrand; Sofia K Forslund; Jennifer L Anderson; Nadejda A Soudzilovskaia; Peter M Bodegom; Johan Bengtsson-Palme; Sten Anslan; Luis Pedro Coelho; Helery Harend; Jaime Huerta-Cepas; Marnix H Medema; Mia R Maltz; Sunil Mundra; Pål Axel Olsson; Mari Pent; Sergei Põlme; Shinichi Sunagawa; Martin Ryberg; Leho Tedersoo; Peer Bork
Journal:  Nature       Date:  2018-08-01       Impact factor: 49.962

3.  Carbon sequestration is related to mycorrhizal fungal community shifts during long-term succession in boreal forests.

Authors:  Karina E Clemmensen; Roger D Finlay; Anders Dahlberg; Jan Stenlid; David A Wardle; Björn D Lindahl
Journal:  New Phytol       Date:  2014-12-11       Impact factor: 10.151

4.  Global biogeography of highly diverse protistan communities in soil.

Authors:  Scott T Bates; Jose C Clemente; Gilberto E Flores; William Anthony Walters; Laura Wegener Parfrey; Rob Knight; Noah Fierer
Journal:  ISME J       Date:  2012-12-13       Impact factor: 10.302

5.  The biomass distribution on Earth.

Authors:  Yinon M Bar-On; Rob Phillips; Ron Milo
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-21       Impact factor: 11.205

6.  Copper Affects Composition and Functioning of Microbial Communities in Marine Biofilms at Environmentally Relevant Concentrations.

Authors:  Natàlia Corcoll; Jianghua Yang; Thomas Backhaus; Xiaowei Zhang; Karl Martin Eriksson
Journal:  Front Microbiol       Date:  2019-01-08       Impact factor: 5.640

7.  High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution.

Authors:  Benjamin J Callahan; Joan Wong; Cheryl Heiner; Steve Oh; Casey M Theriot; Ajay S Gulati; Sarah K McGill; Michael K Dougherty
Journal:  Nucleic Acids Res       Date:  2019-10-10       Impact factor: 16.971

8.  Build your own soil: exploring microfluidics to create microbial habitat structures.

Authors:  Kristin Aleklett; E Toby Kiers; Pelle Ohlsson; Thomas S Shimizu; Victor Ea Caldas; Edith C Hammer
Journal:  ISME J       Date:  2017-11-14       Impact factor: 11.217

9.  Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots.

Authors:  Samiran Banerjee; Florian Walder; Lucie Büchi; Marcel Meyer; Alain Y Held; Andreas Gattinger; Thomas Keller; Raphael Charles; Marcel G A van der Heijden
Journal:  ISME J       Date:  2019-03-08       Impact factor: 10.302

Review 10.  Emerging Priorities for Microbiome Research.

Authors:  Chad M Cullen; Kawalpreet K Aneja; Sinem Beyhan; Clara E Cho; Stephen Woloszynek; Matteo Convertino; Sophie J McCoy; Yanyan Zhang; Matthew Z Anderson; David Alvarez-Ponce; Ekaterina Smirnova; Lisa Karstens; Pieter C Dorrestein; Hongzhe Li; Ananya Sen Gupta; Kevin Cheung; Jennifer Gloeckner Powers; Zhengqiao Zhao; Gail L Rosen
Journal:  Front Microbiol       Date:  2020-02-19       Impact factor: 5.640

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  1 in total

1.  Soil microbial diversity and functional capacity associated with the production of edible mushroom Stropharia rugosoannulata in croplands.

Authors:  Shaojun Tang; Tingting Fan; Lei Jin; Pin Lei; Chenxia Shao; Shenlian Wu; Yi Yang; Yuelin He; Rui Ren; Jun Xu
Journal:  PeerJ       Date:  2022-10-03       Impact factor: 3.061

  1 in total

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