Literature DB >> 31377600

Integrating in silico models and read-across methods for predicting toxicity of chemicals: A step-wise strategy.

Emilio Benfenati1, Qasim Chaudhry2, Giuseppina Gini3, Jean Lou Dorne4.   

Abstract

In silico methods and models are increasingly used for predicting properties of chemicals for hazard identification and hazard characterisation in the absence of experimental toxicity data. Many in silico models are available and can be used individually or in an integrated fashion. Whilst such models offer major benefits to toxicologists, risk assessors and the global scientific community, the lack of a consistent framework for the integration of in silico results can lead to uncertainty and even contradictions across models and users, even for the same chemicals. In this context, a range of methods for integrating in silico results have been proposed on a statistical or case-specific basis. Read-across constitutes another strategy for deriving reference points or points of departure for hazard characterisation of untested chemicals, from the available experimental data for structurally-similar compounds, mostly using expert judgment. Recently a number of software systems have been developed to support experts in this task providing a formalised and structured procedure. Such a procedure could also facilitate further integration of the results generated from in silico models and read-across. This article discusses a framework on weight of evidence published by EFSA to identify the stepwise approach for systematic integration of results or values obtained from these "non-testing methods". Key criteria and best practices for selecting and evaluating individual in silico models are also described, together with the means to combining the results, taking into account any limitations, and identifying strategies that are likely to provide consistent results.
Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2019        PMID: 31377600     DOI: 10.1016/j.envint.2019.105060

Source DB:  PubMed          Journal:  Environ Int        ISSN: 0160-4120            Impact factor:   9.621


  10 in total

1.  Using VEGAHUB Within a Weight-of-Evidence Strategy.

Authors:  Serena Manganelli; Alessio Gamba; Erika Colombo; Emilio Benfenati
Journal:  Methods Mol Biol       Date:  2022

2.  In Silico Prediction of Chemically Induced Mutagenicity: A Weight of Evidence Approach Integrating Information from QSAR Models and Read-Across Predictions.

Authors:  Enrico Mombelli; Giuseppa Raitano; Emilio Benfenati
Journal:  Methods Mol Biol       Date:  2022

3.  QSAR Methods.

Authors:  Giuseppina Gini
Journal:  Methods Mol Biol       Date:  2022

4.  In Silico Methods for Environmental Risk Assessment: Principles, Tiered Approaches, Applications, and Future Perspectives.

Authors:  Maria Chiara Astuto; Matteo R Di Nicola; José V Tarazona; A Rortais; Yann Devos; A K Djien Liem; George E N Kass; Maria Bastaki; Reinhilde Schoonjans; Angelo Maggiore; Sandrine Charles; Aude Ratier; Christelle Lopes; Ophelia Gestin; Tobin Robinson; Antony Williams; Nynke Kramer; Edoardo Carnesecchi; Jean-Lou C M Dorne
Journal:  Methods Mol Biol       Date:  2022

5.  Evaluation of Existing QSAR Models and Structural Alerts and Development of New Ensemble Models for Genotoxicity Using a Newly Compiled Experimental Dataset.

Authors:  Prachi Pradeep; Richard Judson; David M DeMarini; Nagalakshmi Keshava; Todd M Martin; Jeffry Dean; Catherine F Gibbons; Anita Simha; Sarah H Warren; Maureen R Gwinn; Grace Patlewicz
Journal:  Comput Toxicol       Date:  2021-05-01

6.  Cupressus sempervirens Essential Oil: Exploring the Antibacterial Multitarget Mechanisms, Chemcomputational Toxicity Prediction, and Safety Assessment in Zebrafish Embryos.

Authors:  Sarra Akermi; Slim Smaoui; Khaoula Elhadef; Mariam Fourati; Nacim Louhichi; Moufida Chaari; Ahlem Chakchouk Mtibaa; Aissette Baanannou; Saber Masmoudi; Lotfi Mellouli
Journal:  Molecules       Date:  2022-04-19       Impact factor: 4.927

7.  Exploring the active constituents of Oroxylum indicum in intervention of novel coronavirus (COVID-19) based on molecular docking method.

Authors:  Sapan Shah; Dinesh Chaple; Sumit Arora; Subhash Yende; Keshav Moharir; Govind Lohiya
Journal:  Netw Model Anal Health Inform Bioinform       Date:  2021-02-06

8.  Use of Mixture Dosing and Nonlinear Mixed Effect Modeling of Eight Environmental Contaminants in Rabbits to Improve Extrapolation Value of Toxicokinetic Data.

Authors:  Véronique Gayrard; Jessika Moreau; Nicole Picard-Hagen; Virginie Helies; Philippe Marchand; Jean-Philippe Antignac; Pierre-Louis Toutain; Roger Leandri
Journal:  Environ Health Perspect       Date:  2021-11-17       Impact factor: 9.031

9.  Guidance Document on Scientific criteria for grouping chemicals into assessment groups for human risk assessment of combined exposure to multiple chemicals.

Authors:  Simon John More; Vasileios Bampidis; Diane Benford; Claude Bragard; Antonio Hernandez-Jerez; Susanne Hougaard Bennekou; Thorhallur Ingi Halldorsson; Konstantinos Panagiotis Koutsoumanis; Claude Lambré; Kyriaki Machera; Hanspeter Naegeli; Søren Saxmose Nielsen; Josef Rudolf Schlatter; Dieter Schrenk; Vittorio Silano; Dominique Turck; Maged Younes; Emilio Benfenati; Amélie Crépet; Jan Dirk Te Biesebeek; Emanuela Testai; Bruno Dujardin; Jean Lou Cm Dorne; Christer Hogstrand
Journal:  EFSA J       Date:  2021-12-17

10.  Investigation of potential descriptors of chemical compounds on prevention of nephrotoxicity via QSAR approach.

Authors:  Hung-Jin Huang; Yu-Hsuan Lee; Chu-Lin Chou; Cai-Mei Zheng; Hui-Wen Chiu
Journal:  Comput Struct Biotechnol J       Date:  2022-04-15       Impact factor: 6.155

  10 in total

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