Literature DB >> 31373795

Expanding the Dynamic Range of a Transcription Factor-Based Biosensor in Saccharomyces cerevisiae.

Yasaman Dabirian1,2, Xiaowei Li1, Yun Chen1,2, Florian David1,2, Jens Nielsen1,2,3,4, Verena Siewers1,2.   

Abstract

Metabolite biosensors are useful tools for high-throughput screening approaches and pathway regulation approaches. An important feature of biosensors is the dynamic range. To expand the maximum dynamic range of a transcription factor-based biosensor in Saccharomyces cerevisiae, using the fapO/FapR system from Bacillus subtilis as an example case, five native promoters, including constitutive and glucose-regulated ones, were modified. By evaluating different binding site (BS) positions in the core promoters, we identified locations that resulted in a high maximum dynamic range with low expression under repressed conditions. We further identified BS positions in the upstream element region of the TEF1 promoter that did not influence the native promoter strength but resulted in repression in the presence of a chimeric repressor consisting of FapR and the yeast repressor Mig1. These modified promoters with broad dynamic ranges will provide useful information for the engineering of future biosensors and their use in complex genetic circuits.

Entities:  

Keywords:  Saccharomyces cerevisiae; biosensor; fapO/FapR; malonyl-CoA; maximum dynamic range; promoter engineering

Mesh:

Substances:

Year:  2019        PMID: 31373795     DOI: 10.1021/acssynbio.9b00144

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  8 in total

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2.  Transporter-Driven Engineering of a Genetic Biosensor for the Detection and Production of Short-Branched Chain Fatty Acids in Saccharomyces cerevisiae.

Authors:  Ryoma Miyake; Hua Ling; Jee Loon Foo; Nobutake Fugono; Matthew Wook Chang
Journal:  Front Bioeng Biotechnol       Date:  2022-03-18

3.  Signal amplification of araC pBAD using a standardized translation initiation region.

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4.  Identification of acetic acid sensitive strains through biosensor-based screening of a Saccharomyces cerevisiae CRISPRi library.

Authors:  Maurizio Mormino; Ibai Lenitz; Verena Siewers; Yvonne Nygård
Journal:  Microb Cell Fact       Date:  2022-10-15       Impact factor: 6.352

Review 5.  Recent trends in biocatalysis.

Authors:  Dong Yi; Thomas Bayer; Christoffel P S Badenhorst; Shuke Wu; Mark Doerr; Matthias Höhne; Uwe T Bornscheuer
Journal:  Chem Soc Rev       Date:  2021-06-18       Impact factor: 60.615

6.  Engineering transcription factor-based biosensors for repressive regulation through transcriptional deactivation design in Saccharomyces cerevisiae.

Authors:  Chenxi Qiu; Xiaoxu Chen; Reheman Rexida; Yu Shen; Qingsheng Qi; Xiaoming Bao; Jin Hou
Journal:  Microb Cell Fact       Date:  2020-07-20       Impact factor: 5.328

Review 7.  Transcription Factor Engineering for High-Throughput Strain Evolution and Organic Acid Bioproduction: A Review.

Authors:  Jia-Wei Li; Xiao-Yan Zhang; Hui Wu; Yun-Peng Bai
Journal:  Front Bioeng Biotechnol       Date:  2020-02-19

8.  The Yeast eIF2 Kinase Gcn2 Facilitates H2O2-Mediated Feedback Inhibition of Both Protein Synthesis and Endoplasmic Reticulum Oxidative Folding during Recombinant Protein Production.

Authors:  Veronica Gast; Kate Campbell; Cecilia Picazo; Martin Engqvist; Verena Siewers; Mikael Molin
Journal:  Appl Environ Microbiol       Date:  2021-07-13       Impact factor: 4.792

  8 in total

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