| Literature DB >> 31373179 |
William B Hannah1,2,3, Suzanne DeBrosse1,3, BreAnna Kinghorn4, Steven Strausbaugh2,5, Moira L Aitken6, Margaret Rosenfeld4, Whitney E Wolf7, Michael R Knowles8, Maimoona A Zariwala9.
Abstract
BACKGROUND: OFD1 has long been recognized as the gene implicated in the classic dysmorphology syndrome, oral-facial-digital syndrome type I (OFDSI). Over time, pathogenic variants in OFD1 were found to be associated with X-linked intellectual disability, Joubert syndrome type 10 (JBTS10), Simpson-Golabi-Behmel syndrome type 2 (SGBS2), and retinitis pigmentosa. Recently, OFD1 pathogenic variants have been implicated in primary ciliary dyskinesia (PCD), a disorder of the motile cilia with a phenotype that includes recurrent oto-sino-pulmonary infections, situs abnormalities, and decreased fertility.Entities:
Keywords: zzm321990OFD1zzm321990; Primary ciliary dyskinesia
Mesh:
Substances:
Year: 2019 PMID: 31373179 PMCID: PMC6732318 DOI: 10.1002/mgg3.911
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Figure 1(a) The OFD1 transcript (NM_003611.2) is 3,651 base pairs and consists of 23 exons (represented by black rectangles), encoding a 1,012 amino acid protein. Exon 1 contains the entire 5′ untranslated region (5′UTR) and the start codon (ATG). Exon 23 contains the stop codon (TAA) and the entire 3′ untranslated region (3′UTR). The pathogenic hemizygous variants in the three cases described are all located in exon 21 and shown above. Introns (IVS) are represented by horizontal lines. (b‐d) Electropherograms for hemizygous variant in Case 1 affected (top) and wild‐type mother (bottom) (b), Case 2 affected (top) and wild‐type mother and father (bottom) (c), and Case 3 affected (top) and wild‐type unrelated control (bottom) (d). An arrow points to the pathogenic variant in the affected individual’s electropherogram, and a circle marks the wild‐type sequence at that nucleotide in the controls (parents in b and c; unrelated control in d). Wild‐type sequence, amino acid residue, and codon number are shown above the horizontal line. The sequence with the hemizygous variant and amino acid residues (in red) are shown below the horizontal line. (e) Transmission electron microscopy of the Case 1 proband demonstrating normal ciliary ultrastructure with the characteristic 9 + 2 microtubule pair organization and normal dynein arms
Genes analyzed for the presence of pathogenic/likely pathogenic variant
| Genes (alternative name) | Transcript Identifier | Disease association | Case 2: Ambry Panel | Case 3: Whole‐Exome Sequencing | |
|---|---|---|---|---|---|
| 1 |
| NM_018076.2 | PCD | Yes | Yes |
| 2 |
| NM_213607.1 | PCD | Yes | Yes |
| 3 |
| NM_144577.3 | PCD | Yes | Yes |
| 4 |
| NM_145045.4 | PCD | No | Yes |
| 5 |
| NM_181426.1 | PCD | Yes | Yes |
| 6 |
| NM_017950.3 | PCD | Yes | Yes |
| 7 |
| NM_033124.4 | PCD | No | Yes |
| 8 |
| NM_021147.4 | PCD | No | Yes |
| 9 |
| NM_021254.2 | PCD | No | Yes |
| 10 |
| NM_032930.2 | PCD | No | Yes |
| 11 |
| NM_178452.4 | PCD | Yes | Yes |
| 12 |
| NM_018139.2 | PCD | Yes | Yes |
| 13 |
| NM_001256714.1 | PCD | Yes | Yes |
| 14 |
| NM_130810.3 | PCD | No | Yes |
| 15 |
| NM_017802.3 | PCD | Yes | Yes |
| 16 |
| NM_015512.4 | PCD | No | Yes |
| 17 |
| NM_001277115.1 | PCD | Yes | Yes |
| 18 |
| NM_001369.2 | PCD | Yes | Yes |
| 19 |
| NM_001206927.1 | PCD | No | Yes |
| 20 |
| NM_001372.3 | PCD | No | Yes |
| 21 |
| NM_012144.3 | PCD | Yes | Yes |
| 22 |
| NM_023036.4 | PCD | Yes | Yes |
| 23 |
| NM_153614.2 | PCD | No | Yes |
| 24 |
| NM_031427.3 | PCD | No | Yes |
| 25 |
| NM_145038.3 | PCD | No | Yes |
| 26 |
| NM_001481.2 | PCD | No | Yes |
| 27 |
| NM_139285.3 | PCD | No | Yes |
| 28 |
| NM_032821.2 | PCD | No | Yes |
| 29 |
| NM_198075 | PCD | No | Yes |
| 30 |
| NM_012472.4 | PCD | Yes | Yes |
| 31 |
| NM_001190787.1 | PCD | No | Yes |
| 32 |
| NM_016616.4 | PCD | Yes | Yes |
| 33 |
| NM_003611.2 | PCD; OFD1 | Yes | Yes |
| 34 |
| NM_001169154.1 | PCD | No | Yes |
| 35 |
| NM_000328.2 | PCD | Yes | Yes |
| 36 |
| NM_080860.3 | PCD | No | Yes |
| 37 |
| NM_031924.4 | PCD | No | Yes |
| 38 |
| NM_001010892.2 | PCD | Yes | Yes |
| 39 |
| NM_152732.4 | PCD | Yes | Yes |
| 40 |
| NM_172218.2 | PCD | Yes | Yes |
| 41 |
| NM_001243313 | PCD | No | Yes |
| 42 |
| NM_031421.2 | PCD | No | Yes |
| 43 |
| NM_015896.2 | PCD | No | Yes |
| 44 |
| NM_000492.3 | Cystic Fibrosis | Yes | Yes |
| 45 |
| NM_000542.3 | SMDP1 | No | Yes |
| 46 |
| NM_001172410.1 | SMDP2 | No | Yes |
| 47 |
| NM_001089.2 | SMDP3 | No | Yes |
| 48 |
| NM_001161529.1 | SMDP4 | No | Yes |
| 49 |
| NM_000395.2 | SMDP5 | No | Yes |
| 50 |
| NM_000295.4 | A1AT deficiency | No | Yes |
PCD, Primary ciliary dyskinesia (MIM# 244400); OFD1, Oral‐facial‐digital syndrome I (MIM# 311200); Cystic fibrosis (MIM# 219700); A1AT, Alpha‐1‐Antitrypsin deficiency (MIM# 613490); SMDP, Surfactant metabolism dysfunction protein [MIM#s for SFTPB (265120); SFTPC (610913); ABCA3 (610921; CSF2RA (300770); and CSF2RB (614370)].
Clinical features of current cases and of OFD1‐associated syndromes
| Features | Case 1 | Case 2 | Case 3 | PCD | OFDSI | JBTS | SGBS |
|---|---|---|---|---|---|---|---|
| MIM # when condition is associated with | N/A | N/A | N/A | Not assigned | 311200 | 300804 | 300209 |
| Gender | Male | Male | Male | Both | Classically female, but males have been described | Both (but JBTS10 is XLR) | Classically male |
| Ethnicity | English, Czechoslovakian | White | Hispanic | Multiple ethnicities | Multiple ethnicities | Multiple ethnicities | Multiple ethnicities |
| Inheritance pattern | XLR, de novo variant | XLR, de novo variant | XLR | AR (occasionally XLR) | Classically XLD | AR (occasionally XLR) | XLR |
| Variant | c.2789_2793delTAAAA (p.Ile930Lysfs*8) | c.2862dupT (p.Glu995*) | c.2868delT (p.Pro957Leufs*2) | N/A | N/A | N/A | N/A |
| Laterality defects | No | No | Situs inversus totalis | Yes | No | No | No |
| Oto‐sino‐pulmonary disease | Yes | Yes | Yes | Yes | No | No | No |
| Nasal nitric oxide (nL/min) | 43 and 52 | Not performed | 54.5 | Low | Presumed Normal | Presumed Normal | Presumed Normal |
| Neurologic symptoms | Hypotonia, poor feeding, apneic episodes | Hypotonia, apnea, dysphagia/feeding difficulties, seizures | None known | No | MRI findings as below | Hypotonia, poor feeding, irregular breathing. JSRD can include occipital encephalocele | Hypotonia, occasionally seizures |
| MRI of brain | Unknown | No MTS. Large arachnoid cyst, enlarged ventricles. | Unknown | Normal | Agenesis corpus callosum, porencephaly, hydrocephalus, polymicrogyria, Dandy‐Walker malformation | MTS, agenesis of corpus callosum | Occasionally CNS abnormalities (agenesis of corpus callosum, Chiari malformations, etc. |
| Macrocephaly | Yes | Yes | Not known | No | No | No | Yes |
| Dysmorphic features | Nasal shortening, mid‐face hypoplasia, high‐arched palate, postaxial polydactyly | Large forehead, deep‐set eyes, low nasal bridge, short and upturned nose, thick lips with wide mouth, postaxial polydactyly | None known | No | Oral frenuli, lobulated or bifid tongue, cleft lip/palate, dental anomalies, alar hypoplasia, lateral placement of inner canthi, digit anomalies | Broad forehead, arched eyebrows, ptosis, wide‐spaced eyes, open mouth, polydactyly | Coarse facies, hypertelorism, downslanting palpebral fissures, macroglossia, cleft lip/palate, digit anomalies, short webbed neck. |
| Intellectual disability | Yes | Yes | No | No | Yes | Yes | Yes |
| Renal anomalies | No | No | No | No | Polycystic kidney disease | JSRD can include cystic dysplasia or nephronophthisis | Occasionally such as cystic or large kidneys or duplication of renal pelvis |
| Congenital heart disease | No | ASD | No | Yes | No | No | Occasionally |
| Retinitis pigmentosa | No but abnormal electroretinogram | No | Not known | Not classically (occasionally with | No | JSRD can include retinal dystrophy | No |
| Other features | Immunodeficiency as described in case | Immunodeficiency as described in case | Reported to have fathered children as described in case | Neonatal respiratory distress, infertility | Fibrocystic liver and pancreas | JRSD can include ocular coloboma among other ophthalmologic anomalies and hepatic fibrosis. | SGBS is associated with increased risk of specific tumors (but SGBS2 is not known to be) |
| References | Current study | Current study | Current study | Shapiro et al., | Jones, Jones, & Del Campo, | Parisi, | Jones et al., |
Comparison of the phenotypes of Case 1, Case 2, Case 3, PCD, JBTS, and SGBS.
This table highlights some of the important characteristics of these conditions but is not meant to be a thorough summary of all phenotypic features. Individuals with features of these syndromes due to OFD1 variants may not fit well into the classic descriptions provided in the table (i.e., individuals with JBTS10 may have laterality defects, individuals with SGBS2 are not known to have the same cancer predisposition as individuals with SGBS, etc.).
Abbreviations not used previously: AR, autosomal recessive; JSRD, Joubert syndrome and related disorders; XLD, X‐linked dominant; XLR, X‐linked recessive.