Literature DB >> 31372817

Nanopore sequencing: a rapid solution for infectious disease epidemics.

Ying Cao1,2, Jing Li3,4, Xin Chu5, Haizhou Liu1,2, Wenjun Liu3,4, Di Liu6,7,8.   

Abstract

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Year:  2019        PMID： 31372817      PMCID： PMC7089317          DOI： 10.1007/s11427-019-9596-x

Source DB:  PubMed          Journal:  Sci China Life Sci        ISSN： 1674-7305            Impact factor:   6.038


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  15 in total

Review 1.  Bioinformatics challenges of new sequencing technology.

Authors:  Mihai Pop; Steven L Salzberg
Journal:  Trends Genet       Date:  2008-02-11       Impact factor: 11.639

2.  Highly parallel direct RNA sequencing on an array of nanopores.

Authors:  Daniel R Garalde; Elizabeth A Snell; Daniel Jachimowicz; Botond Sipos; Joseph H Lloyd; Mark Bruce; Nadia Pantic; Tigist Admassu; Phillip James; Anthony Warland; Michael Jordan; Jonah Ciccone; Sabrina Serra; Jemma Keenan; Samuel Martin; Luke McNeill; E Jayne Wallace; Lakmal Jayasinghe; Chris Wright; Javier Blasco; Stephen Young; Denise Brocklebank; Sissel Juul; James Clarke; Andrew J Heron; Daniel J Turner
Journal:  Nat Methods       Date:  2018-01-15       Impact factor: 28.547

3.  Nanopore sequencing and assembly of a human genome with ultra-long reads.

Authors:  Miten Jain; Sergey Koren; Karen H Miga; Josh Quick; Arthur C Rand; Thomas A Sasani; John R Tyson; Andrew D Beggs; Alexander T Dilthey; Ian T Fiddes; Sunir Malla; Hannah Marriott; Tom Nieto; Justin O'Grady; Hugh E Olsen; Brent S Pedersen; Arang Rhie; Hollian Richardson; Aaron R Quinlan; Terrance P Snutch; Louise Tee; Benedict Paten; Adam M Phillippy; Jared T Simpson; Nicholas J Loman; Matthew Loose
Journal:  Nat Biotechnol       Date:  2018-01-29       Impact factor: 54.908

4.  Elucidation of the bacterial communities associated with the harmful microalgae Alexandrium tamarense and Cochlodinium polykrikoides using nanopore sequencing.

Authors:  HyeonSeok Shin; Eunju Lee; Jongoh Shin; So-Ra Ko; Hyung-Seok Oh; Chi-Yong Ahn; Hee-Mock Oh; Byung-Kwan Cho; Suhyung Cho
Journal:  Sci Rep       Date:  2018-03-28       Impact factor: 4.379

5.  Nanopore sequencing for rapid diagnostics of salmonid RNA viruses.

Authors:  Michael D Gallagher; Iveta Matejusova; Lien Nguyen; Neil M Ruane; Knut Falk; Daniel J Macqueen
Journal:  Sci Rep       Date:  2018-11-05       Impact factor: 4.379

6.  Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen.

Authors:  Daniel P Depledge; Kalanghad Puthankalam Srinivas; Tomohiko Sadaoka; Devin Bready; Yasuko Mori; Dimitris G Placantonakis; Ian Mohr; Angus C Wilson
Journal:  Nat Commun       Date:  2019-02-14       Impact factor: 14.919

7.  The triphibious warfare against viruses.

Authors:  William J Liu; Di Liu
Journal:  Sci China Life Sci       Date:  2017-12-01       Impact factor: 6.038

8.  Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak.

Authors:  E Ogbaini-Emovon; S Günther; S Duraffour; L E Kafetzopoulou; S T Pullan; P Lemey; M A Suchard; D U Ehichioya; M Pahlmann; A Thielebein; J Hinzmann; L Oestereich; D M Wozniak; K Efthymiadis; D Schachten; F Koenig; J Matjeschk; S Lorenzen; S Lumley; Y Ighodalo; D I Adomeh; T Olokor; E Omomoh; R Omiunu; J Agbukor; B Ebo; J Aiyepada; P Ebhodaghe; B Osiemi; S Ehikhametalor; P Akhilomen; M Airende; R Esumeh; E Muoebonam; R Giwa; A Ekanem; G Igenegbale; G Odigie; G Okonofua; R Enigbe; J Oyakhilome; E O Yerumoh; I Odia; C Aire; M Okonofua; R Atafo; E Tobin; D Asogun; N Akpede; P O Okokhere; M O Rafiu; K O Iraoyah; C O Iruolagbe; P Akhideno; C Erameh; G Akpede; E Isibor; D Naidoo; R Hewson; J A Hiscox; R Vipond; M W Carroll; C Ihekweazu; P Formenty; S Okogbenin
Journal:  Science       Date:  2019-01-04       Impact factor: 47.728

9.  Mapping and phasing of structural variation in patient genomes using nanopore sequencing.

Authors:  Mircea Cretu Stancu; Markus J van Roosmalen; Ivo Renkens; Marleen M Nieboer; Sjors Middelkamp; Joep de Ligt; Giulia Pregno; Daniela Giachino; Giorgia Mandrile; Jose Espejo Valle-Inclan; Jerome Korzelius; Ewart de Bruijn; Edwin Cuppen; Michael E Talkowski; Tobias Marschall; Jeroen de Ridder; Wigard P Kloosterman
Journal:  Nat Commun       Date:  2017-11-06       Impact factor: 14.919

10.  Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome.

Authors:  Matthew W Keller; Benjamin L Rambo-Martin; Malania M Wilson; Callie A Ridenour; Samuel S Shepard; Thomas J Stark; Elizabeth B Neuhaus; Vivien G Dugan; David E Wentworth; John R Barnes
Journal:  Sci Rep       Date:  2018-09-26       Impact factor: 4.379
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  4 in total

1.  Nanopore Metagenomics Sequencing for Rapid Diagnosis and Characterization of Lily Viruses.

Authors:  Hyo-Jeong Lee; In-Sook Cho; Rae-Dong Jeong
Journal:  Plant Pathol J       Date:  2022-10-01       Impact factor: 2.321

2.  Nanopore-targeted sequencing for simultaneous diagnosis of suspected sepsis and early targeted therapy.

Authors:  Jun-Ying Li; Gai-Gai Shen; Tian-Gang Liu; Liang V Tang; Ling-Hui Xia; Yu Hu
Journal:  Ann Transl Med       Date:  2021-12

3.  Diagnosis of pathogens causing bacterial meningitis using Nanopore sequencing in a resource-limited setting.

Authors:  Srinivas Reddy Pallerla; Do Van Dong; Le Huu Song; Thirumalaisamy P Velavan; Le Thi Kieu Linh; Trinh Van Son; Dao Thanh Quyen; Phan Quoc Hoan; Ngo Tat Trung; Nguyen Trong The; Jule Rüter; Sébastien Boutin; Dennis Nurjadi; Bui Tien Sy; Peter G Kremsner; Christian G Meyer
Journal:  Ann Clin Microbiol Antimicrob       Date:  2022-09-05       Impact factor: 6.781

Review 4.  Current Developments and Challenges in Plant Viral Diagnostics: A Systematic Review.

Authors:  Gajanan T Mehetre; Vincent Vineeth Leo; Garima Singh; Antonina Sorokan; Igor Maksimov; Mukesh Kumar Yadav; Kalidas Upadhyaya; Abeer Hashem; Asma N Alsaleh; Turki M Dawoud; Khalid S Almaary; Bhim Pratap Singh
Journal:  Viruses       Date:  2021-03-05       Impact factor: 5.048
  4 in total

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