Literature DB >> 31368302

Fluctuations of Electric Fields in the Active Site of the Enzyme Ketosteroid Isomerase.

Valerie Vaissier Welborn1, Teresa Head-Gordon1.   

Abstract

We report the effect of conformational dynamics on the fluctuations of electric fields in the active site of the enzyme ketosteroid isomerase (KSI). While KSI is considered to be a rigid enzyme with little conformational variation to support different stages of the catalytic cycle, we show that KSI utilizes cooperative side chain motions of the entire protein scaffold outside the active site to modulate electric fields in the active site. We find that while the active site residues Asp-40 and Tyr-16 maintain their electric field contributions at all effective time scales, the conformational dynamics of a single active residue, Asp-103, promotes large electric field fluctuations that contribute to different stages of the catalytic cycle, including the catalytic step and product release.

Entities:  

Year:  2019        PMID: 31368302     DOI: 10.1021/jacs.9b05323

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Integration of Experimental Data and Use of Automated Fitting Methods in Developing Protein Force Fields.

Authors:  Marcelo D Polêto; Justin A Lemkul
Journal:  Commun Chem       Date:  2022-03-18

2.  TUPÃ: Electric field analyses for molecular simulations.

Authors:  Marcelo D Polêto; Justin A Lemkul
Journal:  J Comput Chem       Date:  2022-04-22       Impact factor: 3.672

3.  A Preorganized Electric Field Leads to Minimal Geometrical Reorientation in the Catalytic Reaction of Ketosteroid Isomerase.

Authors:  Yufan Wu; Stephen D Fried; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2020-05-19       Impact factor: 15.419

Review 4.  Advances in optimizing enzyme electrostatic preorganization.

Authors:  Matthew R Hennefarth; Anastassia N Alexandrova
Journal:  Curr Opin Struct Biol       Date:  2021-07-17       Impact factor: 6.809

5.  Testing the Limitations of MD-Based Local Electric Fields Using the Vibrational Stark Effect in Solution: Penicillin G as a Test Case.

Authors:  Jacek Kozuch; Samuel H Schneider; Chu Zheng; Zhe Ji; Richard T Bradshaw; Steven G Boxer
Journal:  J Phys Chem B       Date:  2021-04-26       Impact factor: 2.991

6.  Combining Evolutionary Conservation and Quantum Topological Analyses To Determine Quantum Mechanics Subsystems for Biomolecular Quantum Mechanics/Molecular Mechanics Simulations.

Authors:  Mark A Hix; Emmett M Leddin; G Andrés Cisneros
Journal:  J Chem Theory Comput       Date:  2021-06-04       Impact factor: 6.578

7.  Electro-opening of a microtubule lattice in silico.

Authors:  Jiří Průša; Ahmed Taha Ayoub; Djamel Eddine Chafai; Daniel Havelka; Michal Cifra
Journal:  Comput Struct Biotechnol J       Date:  2021-03-04       Impact factor: 7.271

8.  Quantification of Local Electric Field Changes at the Active Site of Cytochrome c Oxidase by Fourier Transform Infrared Spectroelectrochemical Titrations.

Authors:  Federico Baserga; Jovan Dragelj; Jacek Kozuch; Hendrik Mohrmann; Ernst-Walter Knapp; Sven T Stripp; Joachim Heberle
Journal:  Front Chem       Date:  2021-04-27       Impact factor: 5.221

9.  Can electric fields drive chemistry for an aqueous microdroplet?

Authors:  Hongxia Hao; Itai Leven; Teresa Head-Gordon
Journal:  Nat Commun       Date:  2022-01-12       Impact factor: 14.919

10.  Extreme Catalytic Power of Ketosteroid Isomerase Related to the Reversal of Proton Dislocations in Hydrogen-Bond Network.

Authors:  Paweł Kędzierski; Maria Zaczkowska; W Andrzej Sokalski
Journal:  J Phys Chem B       Date:  2020-04-27       Impact factor: 2.991

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