| Literature DB >> 31366114 |
Hung-Chih Hsu1,2, Jeng-Fu You2,3, Shu-Jen Chen4, Hua-Chien Chen5, Chien-Yuh Yeh2,3, Wen-Sy Tsai2,3, Hsin-Yuan Hung2,3, Tsai-Sheng Yang1,2, Nina Lapke6, Kien Thiam Tan7.
Abstract
(1) Background: Bevacizumab-based regimens are a standard treatment for metastatic colorectal cancer (mCRC) patients, however meaningful clinical biomarkers for treatment benefit remain scarce. (2)Entities:
Keywords: TP53 DNA binding domain mutation; bevacizumab therapy; metastatic colorectal cancer; next-generation sequencing; progression-free survival
Year: 2019 PMID: 31366114 PMCID: PMC6721375 DOI: 10.3390/cancers11081079
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.639
Figure 1Genetic alterations in oncogenic pathways and frequently mutated genes in bevacizumab-treated patients according to progression-free survival (PFS). Patients were sorted according to their PFS duration, with all patients except the two patients with the longest PFS eventually relapsing during the study period. Genetic alterations are displayed in an oncoprint plot according to their occurrence in genes of important oncogenic pathways. PFS, progression-free survival.
Statistical analysis of the association of progression-free survival (PFS) with frequently altered genes and cancer signaling pathways.
| Genetic Alterations | n (%) | Median PFS (Months) | HR (95% CI) | ||
|---|---|---|---|---|---|
|
| 36 (100) | 10.0 | |||
| Gene | |||||
|
| no | 7 (19) | 9.5 | 1.00 | 0.188 |
| yes | 29 (81) | 11.2 | 0.58 (0.19–1.37) | ||
|
| no | 11 (31) | 11.2 | 1.00 | 0.863 |
| yes | 25 (69) | 9.8 | 1.06 (0.52–2.17) | ||
|
| no | 14 (39) | 9.7 | 1.00 | 0.645 |
| yes | 22 (61) | 10.7 | 0.85 (0.42–1.70) | ||
|
| no | 16 (44) | 9.8 | 1.00 | 0.728 |
| yes | 20 (56) | 11.1 | 0.89 (0.45–1.74) | ||
|
| no | 20 (56) | 9.9 | 1.00 | 0.375 |
| yes | 16 (44) | 11.1 | 0.74 (0.38–1.44) | ||
|
| no | 28 (78) | 10.0 | 1.00 | 0.502 |
| yes | 8 (22) | 11.9 | 1.30 (0.57–3.17) | ||
|
| no | 29 (81) | 10.1 | 1.00 | 0.125 |
| yes | 7 (19) | 9.8 | 0.51 (0.24–1.13) | ||
|
| no | 30 (83) | 9.8 | 1.00 | 0.915 |
| yes | 6 (17) | 11.8 | 1.05 (0.43–2.57) | ||
|
| no | 31 (86) | 9.8 | 1.00 | 0.986 |
| yes | 5 (14) | 10.1 | 0.99 (0.38–2.56) | ||
|
| no | 31 (86) | 9.8 | 1.00 | 0.571 |
| yes | 5 (14) | 11.2 | 0.74 (0.30–1.94) | ||
|
| no | 31 (86) | 12.4 | 1.00 | 0.017 |
| yes | 5 (14) | 9.2 | 2.93 (1.44–27.10) | ||
|
| |||||
| p53 | no | 7 (19) | 9.5 | 1.00 | 0.188 |
| yes | 29 (81) | 11.2 | 0.58 (0.19–1.34) | ||
| MAPK/ERK | no | 10 (28) | 12.1 | 1.00 | 0.642 |
| yes | 26 (72) | 9.8 | 1.19 (0.58–2.43) | ||
| TGFβ | no | 13 (36) | 10.1 | 1.00 | 0.947 |
| yes | 23 (64) | 9.8 | 0.98 (0.49–1.95) | ||
| Wnt | no | 13 (36) | 9.8 | 1.00 | 0.815 |
| yes | 23 (64) | 10.1 | 0.92 (0.46–1.85) | ||
| Receptor tyrosine kinases | no | 15 (42) | 9.8 | 1.00 | 0.594 |
| yes | 21 (58) | 10.1 | 0.83 (0.42–1.65) | ||
| PI3K/AKT/mTOR | no | 17 (47) | 10.1 | 1.00 | 0.981 |
| yes | 19 (53) | 9.8 | 1.01 (0.51–1.98) | ||
| Chromatin remodeling | no | 23 (64) | 12.4 | 1.00 | 0.771 |
| yes | 13 (36) | 9.5 | 0.90 (0.44–1.82) | ||
| Cell cycle | no | 28 (78) | 13.1 | 1.00 | 0.017 |
| yes | 8 (22) | 9.6 | 2.44 (1.35–11.40) | ||
Statistical calculations were performed using the log-rank test. CI, confidence interval; HR, hazard ratio; PFS, progression-free survival.
Figure 2TP53 mutations and PFS. TP53 mutations detected in the present study are depicted according to their protein location (A). Patients were categorized according to their TP53 mutation characteristics and sorted according to their PFS duration, with all patients except the two patients with the longest PFS eventually relapsing during the study period (B). PFS is displayed in Kaplan-Meier plots for patients regarding the occurrence of any TP53 mutations (C), TP53 L2, L3, LSH missense mutations (D), TP53 hotspot mutations (E), TP53 binding domain (DBD) missense mutations (F) and TP53 truncating mutations (G). Statistical analysis was performed by the log-rank test. PFS, progression-free survival.
TP53 mutation subtypes and clinical outcome.
| n (%) | Median PFS (Months) | HR (95% CI) | Responders n (%) | Median Tumor Change from Baseline | ||||
|---|---|---|---|---|---|---|---|---|
|
| 36 (100) | 10.0 | 18 (50) | −25% | ||||
| no | 8 (22) | 9.5 | 1.00 | 0.142 | 4 (50) | 1.000 | −25% | 0.759 |
| yes | 28 (78) | 11.8 | 0.57 (0.19–1.24) | 14 (50) | −25% | |||
| no | 20 (56) | 9.6 | 1 | 0.206 | 9 (45) | 0.738 | −17% | 0.260 |
| yes | 16 (44) | 13.5 | 0.65 (0.33–1.27) | 9 (56) | −32% | |||
| no | 24 (67) | 9.5 | 1 | 0.081 | 10 (42) | 0.289 | −15% | 0.029 |
| yes | 12 (33) | 14.0 | 0.54 (0.28–1.07) | 8 (67) | −35% | |||
| no | 14 (39) | 9.5 | 1.00 | 0.005 | 6 (43) | 0.733 | −17% | 0.482 |
| yes | 22 (61) | 13.6 | 0.41 (0.13–0.65) | 12 (55) | −30% | |||
| no | 31 (86) | 12.4 | 1.00 | 0.017 | 16 (52) | 1.000 | −30% | 0.761 |
| yes | 5 (14) | 8.3 | 2.95 (1.45–27.50) | 2 (40) | −16% | |||
Statistical calculations were performed using the log-rank test, Fisher’s Exact test and Mann-Whitney test, respectively. CI, confidence interval; HR, hazard ratio.
Multivariate analysis of Progression-free survival (PFS).
| Factors | n | HR (95% CI) | |
|---|---|---|---|
| Clinical | |||
| Primary tumor site (rectum/colon) | 15/21 | 2.36 (1.05–5.31) | 0.037 |
| Genetic | |||
| 5/31 | 1.26 (0.35–4.55) | 0.725 | |
| 22/14 | 0.31 (0.13–0.77) | 0.011 | |
| 10/26 | 3.87 (1.66–9.00) | 0.002 | |
Multivariate analysis was performed by Cox regression, considering tumor location, TP53 DBD missense mutations, TP53 truncating mutations and PTPRT/PTPRD deleterious alterations as predictive factors for PFS.