Literature DB >> 31358280

Evaluating putative ecological drivers of microcystin spatiotemporal dynamics using metabarcoding and environmental data.

A Banerji1, M J Bagley1, J A Shoemaker1, D R Tettenhorst1, C T Nietch1, H J Allen1, J W Santo Domingo2.   

Abstract

Microcystin is a cyanobacterial hepatotoxin of global concern. Understanding the environmental factors that cause high concentrations of microcystin is crucial to the development of lake management strategies that minimize harmful exposures. While the literature is replete with studies linking cyanobacterial production of microcystin to changes in various nutrients, abiotic stressors, grazers, and competitors, no single biotic or abiotic factor has been shown to be reliably predictive of microcystin concentrations in complex ecosystems. We performed random forest regression analyses with 16S and 18S rRNA gene sequencing data and environmental data to determine which putative ecological drivers best explained spatiotemporal variation in total microcystin and several individual congeners in a eutrophic freshwater reservoir. Model performance was best for predicting concentrations of the congener MC-LR, with ca. 88% of spatiotemporal variance explained. Most of the variance was associated with changes in the relative abundance of the cyanobacterial genus Microcystis. Follow-up RF regression analyses revealed that factors that were the most important in predicting MC-LR were also the most important in predicting Microcystis population dynamics. We discuss how these results relate to prevailing ecological hypotheses regarding the function of microcystin. Published by Elsevier B.V.

Entities:  

Keywords:  Cyanobacteria; Harmful algal bloom (HAB); Metabarcoding; Microcystis; Random forest

Mesh:

Substances:

Year:  2019        PMID: 31358280      PMCID: PMC7877229          DOI: 10.1016/j.hal.2019.05.004

Source DB:  PubMed          Journal:  Harmful Algae        ISSN: 1568-9883            Impact factor:   4.273


  94 in total

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Authors:  Aditee Mitra; Kevin J Flynn
Journal:  Biol Lett       Date:  2006-06-22       Impact factor: 3.703

2.  Genetic analysis of the microcystin biosynthesis gene cluster in Microcystis strains from four bodies of eutrophic water in Japan.

Authors:  Takahiko Noguchi; Azusa Shinohara; Akito Nishizawa; Munehiko Asayama; Tomoyo Nakano; Masateru Hasegawa; Ken-ichi Harada; Tomoyasu Nishizawa; Makoto Shirai
Journal:  J Gen Appl Microbiol       Date:  2009-04       Impact factor: 1.452

Review 3.  Machine learning methods without tears: a primer for ecologists.

Authors:  Julian D Olden; Joshua J Lawler; N LeRoy Poff
Journal:  Q Rev Biol       Date:  2008-06       Impact factor: 4.875

4.  Nitrogen availability increases the toxin quota of a harmful cyanobacterium, Microcystis aeruginosa.

Authors:  Geoffrey P Horst; Orlando Sarnelle; Jeffrey D White; Stephen K Hamilton; Rajreni B Kaul; Julianne D Bressie
Journal:  Water Res       Date:  2014-02-07       Impact factor: 11.236

5.  Microcystin interferes with defense against high oxidative stress in harmful cyanobacteria.

Authors:  J Merijn Schuurmans; Bregje W Brinkmann; A Katharina Makower; Elke Dittmann; Jef Huisman; Hans C P Matthijs
Journal:  Harmful Algae       Date:  2018-08-10       Impact factor: 4.273

6.  Microcystin production by Microcystis aeruginosa in a phosphorus-limited chemostat.

Authors:  H M Oh; S J Lee; M H Jang; B D Yoon
Journal:  Appl Environ Microbiol       Date:  2000-01       Impact factor: 4.792

7.  A cross-taxa study using environmental DNA/RNA metabarcoding to measure biological impacts of offshore oil and gas drilling and production operations.

Authors:  Olivier Laroche; Susanna A Wood; Louis A Tremblay; Joanne I Ellis; Gavin Lear; Xavier Pochon
Journal:  Mar Pollut Bull       Date:  2017-12-01       Impact factor: 5.553

8.  A mannan binding lectin is involved in cell-cell attachment in a toxic strain of Microcystis aeruginosa.

Authors:  Jan-Christoph Kehr; Yvonne Zilliges; Andreas Springer; Matthew D Disney; Daniel D Ratner; Christiane Bouchier; Peter H Seeberger; Nicole Tandeau de Marsac; Elke Dittmann
Journal:  Mol Microbiol       Date:  2006-02       Impact factor: 3.501

9.  The cyanobacterial hepatotoxin microcystin binds to proteins and increases the fitness of microcystis under oxidative stress conditions.

Authors:  Yvonne Zilliges; Jan-Christoph Kehr; Sven Meissner; Keishi Ishida; Stefan Mikkat; Martin Hagemann; Aaron Kaplan; Thomas Börner; Elke Dittmann
Journal:  PLoS One       Date:  2011-03-18       Impact factor: 3.240

10.  Extracellular microcystin prediction based on toxigenic Microcystis detection in a eutrophic lake.

Authors:  Xin Dong; Siyu Zeng; Fei Bai; Dan Li; Miao He
Journal:  Sci Rep       Date:  2016-02-15       Impact factor: 4.379

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  2 in total

1.  Linking Water Quality to Drinking Water Treatment Costs Using Time Series Analysis: Examining the Effect of a Treatment Plant Upgrade in Ohio.

Authors:  Matthew T Heberling; James I Price; Christopher T Nietch; Michael Elovitz; Nathan J Smucker; Donald A Schupp; Amr Safwat; Tim Neyer
Journal:  Water Resour Res       Date:  2022-05-01       Impact factor: 6.159

2.  Highlighting the promise of qPCR-based environmental monitoring: response of the ribosomal RNA:DNA ratio of calanoid copepods to toxic cyanobacteria.

Authors:  Aabir Banerji; Ruta Deshpande; Michael Elk; Jody A Shoemaker; Dan R Tettenhorst; Mark Bagley; Jorge W Santo Domingo
Journal:  Ecotoxicology       Date:  2021-03-06       Impact factor: 2.935

  2 in total

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