Literature DB >> 18605534

Machine learning methods without tears: a primer for ecologists.

Julian D Olden1, Joshua J Lawler, N LeRoy Poff.   

Abstract

Machine learning methods, a family of statistical techniques with origins in the field of artificial intelligence, are recognized as holding great promise for the advancement of understanding and prediction about ecological phenomena. These modeling techniques are flexible enough to handle complex problems with multiple interacting elements and typically outcompete traditional approaches (e.g., generalized linear models), making them ideal for modeling ecological systems. Despite their inherent advantages, a review of the literature reveals only a modest use of these approaches in ecology as compared to other disciplines. One potential explanation for this lack of interest is that machine learning techniques do not fall neatly into the class of statistical modeling approaches with which most ecologists are familiar. In this paper, we provide an introduction to three machine learning approaches that can be broadly used by ecologists: classification and regression trees, artificial neural networks, and evolutionary computation. For each approach, we provide a brief background to the methodology, give examples of its application in ecology, describe model development and implementation, discuss strengths and weaknesses, explore the availability of statistical software, and provide an illustrative example. Although the ecological application of machine learning approaches has increased, there remains considerable skepticism with respect to the role of these techniques in ecology. Our review encourages a greater understanding of machin learning approaches and promotes their future application and utilization, while also providing a basis from which ecologists can make informed decisions about whether to select or avoid these approaches in their future modeling endeavors.

Mesh:

Year:  2008        PMID: 18605534     DOI: 10.1086/587826

Source DB:  PubMed          Journal:  Q Rev Biol        ISSN: 0033-5770            Impact factor:   4.875


  52 in total

1.  Drivers and hotspots of extinction risk in marine mammals.

Authors:  Ana D Davidson; Alison G Boyer; Hwahwan Kim; Sandra Pompa-Mansilla; Marcus J Hamilton; Daniel P Costa; Gerardo Ceballos; James H Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

2.  GIS-based groundwater potential mapping using boosted regression tree, classification and regression tree, and random forest machine learning models in Iran.

Authors:  Seyed Amir Naghibi; Hamid Reza Pourghasemi; Barnali Dixon
Journal:  Environ Monit Assess       Date:  2015-12-19       Impact factor: 2.513

3.  Tree-Based Models for Predicting Mortality in Gram-Negative Bacteremia: Avoid Putting the CART before the Horse.

Authors:  Nathaniel J Rhodes; J Nicholas O'Donnell; Bryan D Lizza; Milena M McLaughlin; John S Esterly; Marc H Scheetz
Journal:  Antimicrob Agents Chemother       Date:  2015-11-23       Impact factor: 5.191

4.  A primer for data assimilation with ecological models using Markov Chain Monte Carlo (MCMC).

Authors:  J M Zobitz; A R Desai; D J P Moore; M A Chadwick
Journal:  Oecologia       Date:  2011-08-27       Impact factor: 3.225

Review 5.  Climate controls over ecosystem metabolism: insights from a fifteen-year inductive artificial neural network synthesis for a subalpine forest.

Authors:  Loren P Albert; Trevor F Keenan; Sean P Burns; Travis E Huxman; Russell K Monson
Journal:  Oecologia       Date:  2017-03-25       Impact factor: 3.225

6.  Evaluating putative ecological drivers of microcystin spatiotemporal dynamics using metabarcoding and environmental data.

Authors:  A Banerji; M J Bagley; J A Shoemaker; D R Tettenhorst; C T Nietch; H J Allen; J W Santo Domingo
Journal:  Harmful Algae       Date:  2019-05-31       Impact factor: 4.273

7.  Weather variability affects abundance of larval Culex (Diptera: Culicidae) in storm water catch basins in suburban Chicago.

Authors:  Allison M Gardner; Gabriel L Hamer; Alicia M Hines; Christina M Newman; Edward D Walker; Marilyn O Ruiz
Journal:  J Med Entomol       Date:  2012-03       Impact factor: 2.278

8.  Local impact of temperature and precipitation on West Nile virus infection in Culex species mosquitoes in northeast Illinois, USA.

Authors:  Marilyn O Ruiz; Luis F Chaves; Gabriel L Hamer; Ting Sun; William M Brown; Edward D Walker; Linn Haramis; Tony L Goldberg; Uriel D Kitron
Journal:  Parasit Vectors       Date:  2010-03-19       Impact factor: 3.876

9.  Domestic animals and epidemiology of visceral leishmaniasis, Nepal.

Authors:  Narayan Raj Bhattarai; Gert Van der Auwera; Suman Rijal; Albert Picado; Niko Speybroeck; Basudha Khanal; Simonne De Doncker; Murari Lal Das; Bart Ostyn; Clive Davies; Marc Coosemans; Dirk Berkvens; Marleen Boelaert; Jean Claude Dujardin
Journal:  Emerg Infect Dis       Date:  2010-02       Impact factor: 6.883

10.  Computational Population Biology: Linking the inner and outer worlds of organisms.

Authors:  Wayne M Getz
Journal:  Isr J Ecol Evol       Date:  2013-10-10       Impact factor: 0.559

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