Nancy M Cladel1,2, Pengfei Jiang3,4, Jingwei J Li1,2, Xuwen Peng5, Timothy K Cooper6, Vladimir Majerciak3, Karla K Balogh1,2, Thomas J Meyer7,8, Sarah A Brendle1,2, Lynn R Budgeon1,2, Debra A Shearer1,2, Regina Munden5, Maggie Cam7, Raghavan Vallur9, Neil D Christensen1,2,9, Zhi-Ming Zheng3, Jiafen Hu1,2. 1. a The Jake Gittlen Laboratories for Cancer Research, Pennsylvania State University College of Medicine , Hershey , PA , USA. 2. b Department of Pathology, Pennsylvania State University College of Medicine , Hershey , PA , USA. 3. c Tumor Virus RNA Biology Section, RNA Biology Laboratory, National Cancer Institute, NIH , Frederick , MD , USA. 4. d Department of Immunology and Microbiology, School of Basic Medical Sciences, Wenzhou Medical University , Wenzhou , People's Republic of China. 5. e Department of Comparative Medicine, Pennsylvania State University College of Medicine , Hershey , PA , USA. 6. f Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, NIH , Frederick , MD , USA. 7. g CCR Collaborative Bioinformatics Resource (CCBR), Center for Cancer Research, NCI, NIH , Bethesda , MD , USA. 8. h Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research , Frederick , MD , USA. 9. i Department of Microbiology and Immunology, Pennsylvania State University College of Medicine , Hershey , PA , USA.
Abstract
Human papillomaviruses (HPV) contribute to most cervical cancers and are considered to be sexually transmitted. However, papillomaviruses are often found in cancers of internal organs, including the stomach, raising the question as to how the viruses gain access to these sites. A possible connection between blood transfusion and HPV-associated disease has not received much attention. Here we show, in rabbit and mouse models, that blood infected with papillomavirus yields infections at permissive sites with detectable viral DNA, RNA transcripts, and protein products. The rabbit skin tumours induced via blood infection displayed decreased expression of SLN, TAC1, MYH8, PGAM2, and APOBEC2 and increased expression of SDRC7, KRT16, S100A9, IL36G, and FABP9, as seen in tumours induced by local infections. Furthermore, we demonstrate that blood from infected mice can transmit the infection to uninfected animals. Finally, we demonstrate the presence of papillomavirus infections and virus-induced hyperplasia in the stomach tissues of animals infected via the blood. These results indicate that blood transmission could be another route for papillomavirus infection, implying that the human blood supply, which is not screened for papillomaviruses, could be a potential source of HPV infection as well as subsequent cancers in tissues not normally associated with the viruses.
Human papillomaviruses (HPV) contribute to most cervical cancers and are considered to be sexually transmitted. However, papillomaviruses are often found in cancers of internal organs, including the stomach, raising the question as to how the viruses gain access to these sites. A possible connection between blood transfusion and HPV-associated disease has not received much attention. Here we show, in rabbit and mouse models, that blood infected with papillomavirus yields infections at permissive sites with detectable viral DNA, RNA transcripts, and protein products. The rabbit skin tumours induced via blood infection displayed decreased expression of SLN, TAC1, MYH8, PGAM2, and APOBEC2 and increased expression of SDRC7, KRT16, S100A9, IL36G, and FABP9, as seen in tumours induced by local infections. Furthermore, we demonstrate that blood from infectedmice can transmit the infection to uninfected animals. Finally, we demonstrate the presence of papillomavirus infections and virus-induced hyperplasia in the stomach tissues of animals infected via the blood. These results indicate that blood transmission could be another route for papillomavirus infection, implying that the human blood supply, which is not screened for papillomaviruses, could be a potential source of HPV infection as well as subsequent cancers in tissues not normally associated with the viruses.
This study grew out of an observation made in 2005 [1] that a subset of children with HIV also had detectable levels of humanpapillomavirus (HPV) in their blood. Some of these children were hemophiliacs who had
contracted HIV through contaminated transfusions. HPV has been detected in malignant
tissues, including those of the head and neck [2], esophagus [3], lung [4], colorectum [5,6], prostate [7,8], breast [9,10] and
stomach [11,12]. We asked: (1) Could blood be a non-sexual mode for the transmission of
papillomavirus infections? (2) Is the public at risk since the blood supply is not screened
for papillomaviruses?HPV is strictly species-specific [13] and thus,
cannot be studied directly in animals. Our laboratory has two preclinical animal models with
their own naturally occurring papillomaviruses [14-17]. We have developed methods that allow us to use these models
to test the possibility of papillomavirus transmission by blood.The Cottontail Rabbit Papillomavirus (CRPV) infection model is a gold standard preclinical
model for HPV-associated infections and diseases [14,18]. This model has been in use in
our laboratory for more than three decades. CRPV infections produce cutaneous tumours which,
in time, progress to cancer [15]. Using this
model, (1) We detected viral DNA in the blood of animals infected with CRPV; (2) We produced
papillomavirus infections by injecting virus and viral DNA into the ear vein; and (3) We
transfused blood containing CRPV virus from a previously transfused animal to an uninfected
rabbit and demonstrated papilloma formation. These results showed that blood containing
papillomavirus or viral DNA could yield infections in recipients and strengthened
the possibility that human papillomaviruses can be transmitted by blood.We then extended these studies to the novel mousepapillomavirus (MmuPV1) model. MmuPV1 is
the first mousepapillomavirus suitable for large-scale laboratory studies. MmuPV1 has both
cutaneous and mucosal tropisms [19-21]. For this study, (1) Naïve animals were infected with virus via the tail
vein. As for the rabbit, infections developed at susceptible sites. Furthermore
infections were detected in the stomachs of three animals; (2) Blood was
drawn from infectedmice and transfused into naïve animals. Infections developed at both
cutaneous and mucosal sites in these animals. In addition, an infection was detected
in the stomach of one of the six animals.Taken together, these results provide direct evidence of blood transmission of
papillomaviruses. The findings call into question the safety of the human blood supply and
suggest that consideration be given to the screening of blood for HPV contamination.
Materials and methods
Animals and viral infections
All animal work was approved by the Institutional Animal Care and Use Committee of
Pennsylvania State University’s College of Medicine (COM) and all procedures were
performed in accordance with the required guidelines and regulations. Outbred New Zealand
White (NZW) rabbits were purchased from Robinson and housed individually. Male and female
Hsd: NU outbred athymic nude mice (Foxn1nu/nu) (6–8 weeks old) were obtained
from ENVIGO and were housed (2–3 mice/cage) in sterile cages within sterile filter hoods
and were fed sterilized food and water in the COM BL2 animal core facility.
Viral stock
Virus was isolated from cottontailrabbit tumours or tumours on the tails of mice from
our previous studies [22,23]. In brief, papillomas from the cottontailrabbits or tumours
scraped from mouse tails were homogenized in phosphate-buffered saline (1 × PBS) using a
Polytron homogenizer (Brinkman PT10-35) at highest speed for three minutes while chilling
in an ice bath. The homogenate was spun at 10,000 rpm and the supernatant was decanted
into Eppendorf tubes for storage at −20°C. For these experiments, the virus was diluted
1:5 in 200 μl of 1 × PBS and was passed through a 0.2 μm cellulose acetate sterile syringe
filter. Viral DNA extracted from 5 μl of this virus stock was quantitated using qPCR as
described [24].
Titration of CRPV virus and viral DNA
Viral skin infections can be initiated with either virus [25] or viral DNA cloned into a plasmid vector [26,27].
Our earlier work demonstrated the importance of wounding prior to infection [25]. To identify the optimal concentration for both
virus and viral DNA infections in rabbits for the current work, titration studies were
conducted using the pre-wounding skin infection method developed in our laboratory [25]. Results demonstrated that more than
2.75 × 106 virion DNA equivalents (Supplementary Table 1) and
1.3 × 1010 copies for cloned infectious CRPV DNA (Supplementary Table 4) are
required to guarantee 100% tumour appearance at locally infected sites. For this study,
500 µl of virus stock (2.75 × 1010 virion DNA equivalents) and 500 µg of the
cloned CRPV DNA (estimated to be 4.6 × 1011 copies/µl blood) were used for IV
infection to maximize the opportunity to detect disease.
Routes of infection and sample collection
CRPV infectious virions used in the current study were from a viral stock previously
reported [28]. CRPV DNA was cloned into a pUC19
vector as described in our previous publications [29]. Animal back skin sites were pre-wounded three days before infection using
our established pre-wounding techniques [25].
For local infections, the rabbits were challenged with either virions or viral DNA at the
pre-wounded sites. To investigate whether intravenous (IV) infection with virions (500 µl
of the viral stock = 2.75 × 1010 viral DNA equivalents) and viral DNA (500 µg
of plasmid = 4.6 × 1011 copies/µl blood) could induce tumours at distant
susceptible back sites, six to eight back skin sites of different groups of rabbits were
shaved and pre-wounded with a scalpel blade as previously described [25]. Virus or viral DNA was delivered via the marginal ear vein
and then back skin sites were gently re-wounded with a 28G needle [25]. The infected animals were monitored for tumour growth weekly
and tumours were measured and documented photographically. Rabbits were euthanized up to
12 weeks after initial viral infection, and tissues were collected for cellular,
molecular, and histological analyses. Serum samples were harvested for the detection of
anti-viral antibodies. To investigate whether transfusions of blood from an animal that
had received virus (500 µl of the viral stock = 2.75 × 1010 viral DNA
equivalents) by IV injection could transmit infection to naïve siblings, 10 ml of blood
was drawn from the injected animal 25 min post IV infection and transfused into naïve
animals via the marginal ear vein with pre-wounded back sites. Recipients were monitored
for tumour growth and measurements were recorded.In addition to the CRPV/rabbit model, we used the more recently established MmuPV1/mouse
model for a number of our studies [16]. Female
mice were subcutaneously inoculated with 3 mg Depo-Provera (Pfizer) in 100 µl PBS three
days before the viral infection as previously described [20]. Mice were sedated intraperitoneally with 0.1 ml/10 g body
weight with ketamine/xylazine mixture (100 mg/10 mg in 10 ml ddH2O). The
penile, the lower genital (vaginal) and anal sites were wounded with Doctors’ Brush Picks
coated with Conceptrol (Ortho Options, over the counter) as previously described [24]. Tongues were withdrawn using a sterile forceps
and microneedles were used to wound the ventral surface of the tongues [24]. Twenty-four hours after wounding, eight female
and six male Hsd: Nu athymic mice were again anesthetized and challenged with infectious
MmuPV1 virions (1 × 108 viral DNA equivalents) via the tail vein. The injection
sites were topically treated with neutralizing antibody (MPV.A4) immediately post
injection to neutralize any virions remaining at the injection site. Monitoring was
conducted weekly for infection at the muzzle and the tail and progress was documented
photographically at these cutaneous sites for each animal [19,20]. Viral
infection at three mucosal sites (the vagina or the penis, the anus, and the tongue) was
monitored for viral DNA using swabs or by lavage as described previously [24]. At the termination of the experiment, selected
organ tissues (kidney, lung, liver, spleen, stomach, and bladder) were harvested to
determine whether viral infections could be detected in other unanticipated sites. The
tissues were analyzed histologically for the presence of viral DNA and/or L1 and E4
protein production.To investigate whether blood from actively infectedmice could transmit the infection to
naïve animals, blood was drawn from one infected male and one infected female mouse and
transfused by tail vein injection to three naïve male and female mice respectively. The
injection sites were treated topically with neutralizing antibody (MPV.A4) immediately
post injection to neutralize any virions remaining at the site. The mice were maintained
for up to six months post infection and tissues were collected for cellular, molecular,
and histological analyses. Vaginal and anal lavages were conducted using 25 μl of sterile
0.9% NaCl introduced into the vaginal and anal canals with a disposable filter tip. The
rinse was gently pipetted in and out of the canals and stored at −20°C before being
processed for DNA extraction [24]. For oral
lavage, a swab (Puritan Purflock Ultra, Puritan Diagnostics LLC) soaked in 25 μl of
sterile 0.9% NaCl was used [20]. For DNA
extraction, the DNeasy kit (QIAGEN) was used according to the instructions of the
manufacturer. All DNA samples were eluted into 50 µl EB buffer [24].
RNA isolation from rabbit tumours for quantitative PCR assays
Tumour tissues of NZW rabbits with CRPV infections induced by local skin infection and
ear vein IV injections were harvested for qPCR analysis of host genes (Supplementary Table
3). The tissues were homogenized in TriPure reagent (Roche). Total RNA was extracted
according to the TriPure extraction protocol and treated with the TURBO DNA-free™ Kit
(Ambion) to eliminate all traces of viral DNA. The integrity of RNA were evaluated by an
Agilent DNA bioanalyzer and quantified by NanoDrop. Reverse Transcription (RT) was
performed with the SuperScript II kit (Thermo Fisher Scientific). 1 µg of total RNA from
each tissue was used per reverse transcription reaction to synthesize single-stranded
cDNA. cDNA samples were further analyzed using the TaqMan Universal PCR Master Mix (Thermo
Fisher) by a StepOne Plus Real-Time PCR System (Applied Biosystems). To avoid interplate
variability, differentially expressed gene expression analyses were performed using a
single 96-well plate in triplicate. GAPDH was used as an internal control and analyzed in
the same plate for each sample. Each threshold cycle (Ct) value of real-time quantitative
PCR data from three repeats was individually normalized to GAPDH and analyzed by the
2−ΔΔCt method [30]. All primers
and Taqman probes used were listed in Supplementary Table 2.
RNA-seq analysis
Total RNA isolated using TriPure Reagent (Roche) and the RNeasy Mini kit with on-column
DNase-treatment (Qiagen) was used for RNA-seq analysis. The sequencing libraries were
constructed from Ribo-minus RNA using TruSeq Stranded Total RNA kit (Illumina
RS-122-2201). The obtained libraries were then pooled and sequenced using Illumina TruSeq
v4 chemistry, 125-bp paired-end, with 100 million reads depth. The HiSeq RT Analysis
software (RTA v1.18.64) was used for base calling. The Illumina bclfastq v2.17 software
was used to demultiplex and convert binary base calls and qualities to FASTQ format. The
obtained reads were mapped first to the oryCun2.0 (Oryctolagus cuniculus)
reference genome (https://www.ncbi.nlm.nih.gov/assembly/GCF_000003625.2/) to which had been
added a contig containing the cottontail rabbit papillomavirus (CRPV) Hershey strain
reference genome (GenBank Acc. No. JF303889.1) permutated at nt 7421. The viral read
coverage along the CRPV reference genome was then visualized using the IGV software
(http://software.broadinstitute.org/software/igv/). To determine the changes
in host gene expression upon viral infection, the reads were remapped to the oryCun2.0
reference genome without the CRPV contig. RNA-seq NGS-datasets were processed using the
CCBR Pipeliner utility (https://github.com/CCBR/Pipeliner). Briefly, reads were trimmed of
low-quality bases and adapter sequences were removed using Trimmomatic v0.33 [31]. Mapping of reads to the oryCun2.0+CRPV
reference genome was performed using STAR v2.5.2b in 2-pass mode [32]. Then, RSEM v1.3.0 was used to quantify gene-level
expression, with counts normalized to library size as counts-per-million [32]. Finally, limma-voom v3.34.5 was used for
quantile normalization and differential expression [33]. The data discussed in this publication have been deposited in NCBI’s Gene
Expression Omnibus [34] and are accessible
through GEO Series accession number GSE124211. Genes were considered to be attributed to
CRPVinfection if they were significantly (adjusted p ≤ 0.05)
differentially expressed relative to control with absolute fold change relative to control
≥2.0. Genes with ‘unknown’ gene symbols in the oryCun2.0 gene annotation dataset were
quantified but excluded from further analysis in this manuscript. Expression data were
visualized as heat maps using ClustVis [35].
Viral DNA copy number analysis
Linearized MmuPV1 genome DNA was used for standard curve determination by Probe qPCR
analysis (Brilliant III Ultra-Fast qPCR Master Mix, Agilent). The primer pairs
(5′-GGTTGCGTCGGAGAACATATAA-3′ and 5′-CTAAAGCTAACCTGCCACATATC-3′) and the probe
(5′-FAM-TGCCCTTTCA/ZEN/GTGGGTTGAGGACAG-3′-IBFQ-3′) that amplify the viral E2 region were
used. The qPCR reactions were run in AriaMx program (Agilent). Each reaction consisted of
500 nM specific primer pairs and 250 nM double-labelled probes. PCR conditions were:
initial denaturation at 95°C for 10 min, then 40 cycles at 95°C for 10 min, followed by 40
cycles consisting of denaturation at 95°C for 15 s and hybridization of primers and the
probe as well as DNA synthesis at 60°C for 1 min. All samples were tested in at least
duplicates. Viral titres were calculated according to the standard curve. Viral copy
numbers in 2 μl of a 50 μl DNA lavage extract were converted into equivalent DNA load
using the formula 1 ng viral DNA = 1.2 × 108 copies (http://cels.uri.edu/gsc/cndna.html). In some cases we also calculated the
difference in cycle time (Ct) between the 18S rRNA gene and viral DNA (ΔCt) [24]. Fold change (2−ΔΔCt) demonstrates
the relative viral DNA load in each sample as previously described [19].
Antibody detection by ELISA
Rabbit and mouse sera were collected at the termination of the experiment. CRPV or MmuPV1
virus-like particles (VLPs) were used as the antigen for ELISA. Anti-CRPV monoclonal
antibody (CRPV.1A) or anti-MmuPV1 monoclonal antibody (MPV.A4) was used as positive
control and the sera of non-infected animals as negative control for the corresponding
antigens. The ELISA was conducted as previously reported [29].
In vitro neutralization assay
A rabbit cell line (RA2LT) generated in house was used for in vitro neutralization for
serum collected from the CRPV infected rabbits [36]. A mouse keratinocyte cell line (K38, a generous gift from Dr Julia
Reichelt, University of Newcastle, UK) was seeded at 1.5 × 105 cells per well
in DMEM/Ham’s F-12, with 4.5 g/l D-Glucose, 50 µM CaCl2, with L-Glutamine and Na-Pyruvate
(Cedarlane), in 10% FBS with calcium depleted at 32°C. One µl of viral extract from tail
papillomas was incubated with various dilutions of mouse sera (1:50–1:100 dilution) in
media for 1 h at 37°C and added onto K38 cells incubated in 12-well plates at 32°C for
72 h. The cells were harvested with TRIzol reagent (Thermo Fisher).
CRPV E1^E4 detection by RT-qPCR
Total RNA was extracted from the infected cells, and infectivity was assessed by
measuring viral E1^E4 transcripts with RT-qPCR (E1^E4-forward, 5′-CATTCGAGTC
ACTGCTTCTGC-3′; E1^E4-reverse, 5′-GATGCAGGTTTGTCGTTCTCC-3′; E1^E4-probe,
5′-6-carboxyfluorescein (FAM)-TGGAAAACGATAAAGCTCCTCCTCAGCC-6-carboxytetramethylrhodamine
(TAMRA)-3′) as previously described [22] with a
few modifications as follows: The Brilliant III RT-qPCR Master Mix (Agilent) was used for
the RT-qPCR reactions. The following cycling conditions were applied: 50°C for 30 min (the
reverse transcription), 95°C for 10 min, and 40 cycles of 94°C for 15 s and 60°C for
1 min. At the end of each amplification cycle, three fluorescence readings were detected.
Analysis of the amplification efficiencies was performed using the REST software [19].
Western blot analysis
Total protein from matching samples used in the RNA-seq study was isolated by
homogenization in 1 × RIPA (Boston BioProducts) buffer supplemented by 1 × complete
protease inhibitors (Roche). The isolated total protein was analyzed by Western blot for
the expression of endogenous protein using specific antibody against APOBEC2
(Sigma-Aldrich, cat. no. SAB2500083), S100A9 (Abnova, cat. no. PAB11470) and β-tubulin
(Sigma-Aldrich, cat. no. T5201).
Immunohistochemistry and in situ hybridization analyses of infected tissues
After termination of the experiment, the animals were euthanized, and tissues of interest
were fixed in 10% buffered formalin and processed to formalin-fixed paraffin-embedded
(FFPE) sections as previously described [37].
Hematoxylin and eosin (H&E) analysis, in situ hybridization (ISH) and
immunohistochemistry (IHC) were conducted as described in previous studies [24,37].
For IHC, an in-house anti-MmuPV1 L1 monoclonal antibody (MPV.B9) and a rabbit polyclonal
antibody against MmuPV1 E4 protein (a generous gift from Dr John Doorbar) were used on
FFPE sections. For ISH, a biotin labelled 2794 bp EcoRV/SacII sub-genome fragment of CRPV
and 3913 bp EcoRV/BamHI sub-genomic fragment of MmuPV1 were used as in situ hybridization
probes for the detection of CRPV and MmuPV1 DNA in tissues respectively [15,37].
Counterstaining for ISH was Nuclear Fast Red (American MasterTech, Inc.) and for IHC was
hematoxylin (Thomas Scientific).
Results
Intravenous (IV) delivery of CRPV virions yields infections at skin site
The rabbit model was used to test whether CRPV virus introduced into the blood stream
could yield infections at pre-wounded skin sites. In a pilot study animals were infected
via the marginal ear vein with CRPV virions (500 µl of the viral
stock = 2.75 × 1010 viral DNA equivalents) (Supplementary Table 1). The
amount of virus in the circulation was estimated to be 1.8 × 105 copies/µl
blood. Within four weeks tumours were visible at the pre-wounded sites of all animals
(Supplementary Figure 1A–C). The experiment was repeated with four NZW rabbits (NZW#3-6)
using five-fold fewer virions (3.6 × 104/µl blood). 18 of 32 sites developed
papillomas (Figure 1A–C). Representative histology
of tumours from each of two experiments (Figure 1D
and F, 20×) is shown. H and E staining (Figure 1G
and I) similar to that seen in local skin infection (Figure 1H, 20×) is observed. Viral presence was detected by in situ
hybridization (Figure 1E and G, 20× arrows) and
mimics that found in rabbits with local skin infection (Figure 1I, 20× arrows).
Figure 1.
Tumour growth patterns resulting from IV infection with CRPV
virions via marginal ear vein injection. (A) Tumour growth on one (NZW#1)
of the three animals at week 11 post infection is shown. (B) one (NZW#3) of the four
additional rabbits (NZW#3-6) infected by IV injection of virions equivalent to
5.5 × 109 viral DNA equivalents. All developed tumours at six weeks
post infection. Both tumours (A and B) exhibited an appearance similar to tumours
from local skin tumours initiated with high to low dilutions of virus at week six
post infection (C). (D, F) The tumours induced via marginal ear vein (IV) infection
have similar morphology and histology (H&E, 20×) to those (H) initiated by local
infections (H&E, 20×). Viral DNA was detected by in situ
hybridization (ISH) in tumours induced by both intravenous (E, G) and local skin
infections (I, 20×, arrows).
Tumour growth patterns resulting from IV infection with CRPV
virions via marginal ear vein injection. (A) Tumour growth on one (NZW#1)
of the three animals at week 11 post infection is shown. (B) one (NZW#3) of the four
additional rabbits (NZW#3-6) infected by IV injection of virions equivalent to
5.5 × 109 viral DNA equivalents. All developed tumours at six weeks
post infection. Both tumours (A and B) exhibited an appearance similar to tumours
from local skin tumours initiated with high to low dilutions of virus at week six
post infection (C). (D, F) The tumours induced via marginal ear vein (IV) infection
have similar morphology and histology (H&E, 20×) to those (H) initiated by local
infections (H&E, 20×). Viral DNA was detected by in situ
hybridization (ISH) in tumours induced by both intravenous (E, G) and local skin
infections (I, 20×, arrows).Anti-CRPV antibodies were detected in the sera of all intravenously infected animals.
(Supplementary Figure 2A). These antibodies were neutralizing in in vitro
neutralization assays (Supplementary Figure 2B). Collectively, these findings demonstrate
that CRPV circulating in the blood of rabbits can initiate infection at prewounded
cutaneous sites and stimulate anti-viral immune responses.
RNA sequencing (RNA-seq) analysis revealed similar viral transcription patterns for
tumours resulting from local skin and intravenous CRPV infections
Total RNA was isolated from four tumours generated by marginal ear vein injection. The
RNA was analyzed by RNA-seq. By mapping the raw reads to the newly arranged linear CRPV
genome starting from nt 7421 and ending at nt 7420 using RNA sequence aligner TopHat, we
obtained 18318, 24014, 62100, and 128869 viral reads for the respective tissues. These
account for 0.0290%, 0.0442%, 0.0911%, and 0.1960% of total reads. By uploading the data
to the Integrative Genomics Viewer (IGV) program we found three major peaks in the E6, E7
and E1^E4 regions among all tumour tissues (Figure
2).
Figure 2.
Viral RNA transcripts in four tumour lesions of four individual rabbits IV
infected by CRPV virions through marginal ear vein injection. Total RNA isolated
from each tumour and depleted of ribosomal RNA was analyzed by RNA-seq. By mapping
the RNA-seq raw reads to the newly arranged linear CRPV genome starting from nt 7421
and ending at nt 7420 and by uploading these uniquely mapped viral RNA reads to the
Integrative Genomics Viewer (IGV) program to visualize reads coverage profile along
with the CRPV genome, three major coverage peaks were visualized in the E6, E7 and
E1^E4 regions among all tumour tissues.
Viral RNA transcripts in four tumour lesions of four individual rabbits IV
infected by CRPV virions through marginal ear vein injection. Total RNA isolated
from each tumour and depleted of ribosomal RNA was analyzed by RNA-seq. By mapping
the RNA-seq raw reads to the newly arranged linear CRPV genome starting from nt 7421
and ending at nt 7420 and by uploading these uniquely mapped viral RNA reads to the
Integrative Genomics Viewer (IGV) program to visualize reads coverage profile along
with the CRPV genome, three major coverage peaks were visualized in the E6, E7 and
E1^E4 regions among all tumour tissues.RNA-seq data of three groups of ten tissues (four normal, three each of tumours induced
by IV and local skin infection) were analyzed by Principle Component Analysis (PCA). A
well-grouped dataset was found (Figure 3A). One of
three tumours derived from IV infections had high virus titre by RNA-seq raw reads (Figure 2) and the altered gene expression pattern
resembled that of the tumours induced by local skin infection (Figure 3A). Volcano plots of 17742 annotated genes in the rabbit
genome exhibited significant differences in the host transcriptome for normal control skin
group compared with the tumour groups induced either by IV or local skin infection (Figure 3B,C). Dysregulated expression is detailed in
Supplemental Table 3. Approximately 3000 of 5224 genes showed similar alterations by the
two routes of CRPV infections (Figure 3D). Using
the thresholds of P≤0.05 and absolute fold change (FC) ≥2.0 of gene
expression, we analyzed the top 100 up-regulated and top 100 down-regulated genes in each
group (Figure 3E) by heatmap analysis and
identified the most important genes with differential expression (Figure 3E), notably the genes with upregulated expression. Based
on gene functions related to cell cycle, proliferation, and oncogenesis as well as their
RNA abundance, we subsequently verified nine rabbit genes by real-time qPCR with
significantly different expression in CRPV-induced tumours from both infection routes
(Supplementary Table 3) (Figure 4A,B). Consistent
with RNA-seq data, the expression of SLN, TAC1, MYH8, and PGAM2 were down-regulated,
whereas SDRC7, KRT16, S100A9, IL36G, and FABP9 were up-regulated in both blood (Animal #9,
#11, and #12) and skin (Animal #6, #7, and #8)-induced tumours relative to normal skin
controls (Figure 4B). Consistent with RNA-seq
results, western blot analysis confirmed the increased expression of S100A9 and decreased
expression of APOBEC2 in tumours induced by both routes of infections (Figure 4C). These findings support the hypothesis that bloodborne
and local skin papillomavirus infections have similar infectivity mechanisms.
Figure 3.
Dysregulation of the host transcriptome by CRPV infection. (A) Principle
component analysis of the ten RNA-seq samples. (B-C) Volcano plots of 17742
annotated genes assayed in each contrast of our analysis. The x-axis is the log2
fold change in expression. The y-axis is p-value adjusted for
multiple comparisons. Red dots indicate the genes with both significant differential
expression and large absolute fold change relative to control; grey dots indicate
those genes that do not meet these criteria. Vertical dashed lines represent fold
change thresholds (absolute fold change ≥ 2.0) and horizontal dashed lines represent
the significance threshold (adjusted p ≤ 0.05). (D) Venn diagram of
all 5224 genes with differential expression (adjusted p ≤ 0.05 and
absolute fold change ≥ 2.0) in the wart tissues induced by local skin or IV CRPV
infection over the normal control skin tissues. Numbers with arrows indicate the
number of genes (after all filters) up- and down-regulated in each experimental
group relative to control group. (E) Heat map showing the top 100 up-regulated and
top 100 down-regulated genes with significantly different expression in the tumours
induced by both local skin and those induced by IV infections, relative to control.
A colour scale bar represents relative gene expression level within centred rows.
Unit variance scaling has been applied to rows. Both rows and columns are clustered
using Euclidean distance and complete linkage.
Figure 4.
Representative host genes with differential expression in skin tumours
induced by both routes of CRPV infections. (A) Heat map showing the expression of 9
selected host genes chosen based on their expression abundance and cellular
functions. A colour scale bar represents relative gene expression level within
centred rows. Unit variance scaling has been applied to rows. Both rows and columns
are clustered using Euclidean distance and complete linkage. (B) Verification of
differentially expressed rabbit genes in RNA-seq results by real-time RT-qPCR.
Consistent with RNA-seq data, SLN, TAC1, MYH8, and PGAM2 were down-regulated in both
CRPV blood infection (Animal #9, #11, and #12) and CRPV skin infection (Animal#6,
#7, and #8) animals relative to those in normal control animals, whereas SDRC7,
KRT16, S100A9, IL36G, and FABP9 were up-regulated in both CRPV skin infection and
CRPV blood infection animals compared to normal controls. The Y-axis indicates
relative gene expression levels calculated by 2-ΔΔCт and the X-axis
indicate the different samples. NC, gene expression in the normal tissue, was set to
1 after normalization to GAPDH. (C) Western blot analysis of representative samples
from normal skin and warts induced by cutaneous or intravenous (IV) CRPV infection
for the expression of S100A9 and APOBEC2. Cellular β-tubulin served as a loading
control.
Dysregulation of the host transcriptome by CRPVinfection. (A) Principle
component analysis of the ten RNA-seq samples. (B-C) Volcano plots of 17742
annotated genes assayed in each contrast of our analysis. The x-axis is the log2
fold change in expression. The y-axis is p-value adjusted for
multiple comparisons. Red dots indicate the genes with both significant differential
expression and large absolute fold change relative to control; grey dots indicate
those genes that do not meet these criteria. Vertical dashed lines represent fold
change thresholds (absolute fold change ≥ 2.0) and horizontal dashed lines represent
the significance threshold (adjusted p ≤ 0.05). (D) Venn diagram of
all 5224 genes with differential expression (adjusted p ≤ 0.05 and
absolute fold change ≥ 2.0) in the wart tissues induced by local skin or IV CRPVinfection over the normal control skin tissues. Numbers with arrows indicate the
number of genes (after all filters) up- and down-regulated in each experimental
group relative to control group. (E) Heat map showing the top 100 up-regulated and
top 100 down-regulated genes with significantly different expression in the tumours
induced by both local skin and those induced by IV infections, relative to control.
A colour scale bar represents relative gene expression level within centred rows.
Unit variance scaling has been applied to rows. Both rows and columns are clustered
using Euclidean distance and complete linkage.Representative host genes with differential expression in skin tumours
induced by both routes of CRPV infections. (A) Heat map showing the expression of 9
selected host genes chosen based on their expression abundance and cellular
functions. A colour scale bar represents relative gene expression level within
centred rows. Unit variance scaling has been applied to rows. Both rows and columns
are clustered using Euclidean distance and complete linkage. (B) Verification of
differentially expressed rabbit genes in RNA-seq results by real-time RT-qPCR.
Consistent with RNA-seq data, SLN, TAC1, MYH8, and PGAM2 were down-regulated in both
CRPV blood infection (Animal #9, #11, and #12) and CRPV skin infection (Animal#6,
#7, and #8) animals relative to those in normal control animals, whereas SDRC7,
KRT16, S100A9, IL36G, and FABP9 were up-regulated in both CRPV skin infection and
CRPV blood infection animals compared to normal controls. The Y-axis indicates
relative gene expression levels calculated by 2-ΔΔCт and the X-axis
indicate the different samples. NC, gene expression in the normal tissue, was set to
1 after normalization to GAPDH. (C) Western blot analysis of representative samples
from normal skin and warts induced by cutaneous or intravenous (IV) CRPVinfection
for the expression of S100A9 and APOBEC2. Cellular β-tubulin served as a loading
control.
CRPV DNA delivered intravenously yielded infections
HPV DNA can be detected in human blood [1,38-40]. Whether
this detected DNA pose a risk for infections is uncertain. CRPV DNA delivered directly to
wounded sites results in tumour growth [25,26,41]. We hypothesized that CRPV DNA delivered to the blood can
induce infections at permissive back skin sites. To maximize the result based on previous
work (Supplementary Table 4), we inoculated 500 µg of viral DNA (estimated to be
4.6 × 1011 copies/µl blood) into the ear veins of two rabbits with
pre-wounded back skin sites. Both rabbits grew tumours at week nine post IV infection.
Histology (Supplementary Figure 3B) of one representative papilloma was similar to that of
the tumours initiated by local skin infections (Figure
1H).
Transfusion of blood containing CRPV virus yielded infections
The driving question behind our research was ‘Can transfusion of human blood containing
HPV sequences result in papillomavirus infection in the recipient?’ In a small pilot
study, two NZW rabbits were intravenously infected with CRPV virions
(1.8 × 105 copies/µl blood). Twenty-five minutes after the virus inoculation,
10 ml of blood (viral concentration was estimated to be 3 × 106 copies in 10 ml
blood) was drawn from each donorrabbit and infused into corresponding siblings, each with
pre-wounded back sites. One recipient grew a skin tumour ten weeks post transfusion
(Supplementary Figure 3C). Histology of this tumour (Supplementary Figure 3D) was similar
to that shown in Figure 1K. Viral DNA was detected
in the tumour by in situ hybridization (Supplementary Figure 3E, 60×).
Athymic mice inoculated intravenously with MmuPV1 developed infections at both
cutaneous and mucosal tissues
1 × 108 viral DNA equivalent virions were injected into the tail vein of six
female and six male Hsd: NU mice that had been pre-wounded at both cutaneous and mucosal
sites according to our standard protocol [21,24]. The injection sites were
treated topically with excess neutralizing monoclonal antibody (MPV.A4) to neutralize any
virions remaining at the site (Supplementary Figure 4) [20]. All tails developed tumours at the prewounded sites
(representative mouse from female and male groups respectively, Figure 5A for females and 5C for males). No tumours developed at the sites of injection indicating that
MPV.A4 efficiently blocked possible skin contamination. Mucosal sites (the tongue, anus,
vagina, and penis) were positive for viral DNA by qPCR (Figure 5B,D) and by in situ hybridization (ISH) (Figure 5E–G for females, I, K for male penile tissues). All
tissues were positive for viral capsid L1 and E4 proteins by iommunohistochemistry.
Representative figures are shown for penile tissues: L1 (Figure 5L) and E4 protein (Figure 5J,M).
Figure 5.
Tumour growth at cutaneous sites (muzzle and tail) and viral DNA detection
at the four mucosal (vaginal, V; penile, P; anal, A; and oral, O) sites after MmuPV1
IV infection via the tail vein. Infections were introduced via the tail vein with
1 × 108 viral DNA equivalent virions in eight Hsd: Nu female and six
male mice that had been pre-wounded according to our standard protocol. The
injection sites were treated topically with an excess of neutralizing antibody
(MPV.A4) immediately post injection to neutralize any virions remaining at the site.
(A, C) The animals were monitored for tumour growth at pre-wounded cutaneous sites
and (B, D) for viral DNA detection by qPCR at mucosal sites. (E) tongue, (F)
vaginal, (G) anal, (all 20×), were positive for viral DNA by in situ hybridization
(ISH, in blue). Interestingly, dysplasia was found in the penile tissue (H&E, H,
10×, arrow) that was positive for viral DNA by ISH (I, 10×, K, 20×), viral capsid
protein L1 (L, 20×), and E4 protein (J, M, 20×) by
immunohistochemistry.
Tumour growth at cutaneous sites (muzzle and tail) and viral DNA detection
at the four mucosal (vaginal, V; penile, P; anal, A; and oral, O) sites after MmuPV1
IV infection via the tail vein. Infections were introduced via the tail vein with
1 × 108 viral DNA equivalent virions in eight Hsd: Nu female and six
male mice that had been pre-wounded according to our standard protocol. The
injection sites were treated topically with an excess of neutralizing antibody
(MPV.A4) immediately post injection to neutralize any virions remaining at the site.
(A, C) The animals were monitored for tumour growth at pre-wounded cutaneous sites
and (B, D) for viral DNA detection by qPCR at mucosal sites. (E) tongue, (F)
vaginal, (G) anal, (all 20×), were positive for viral DNA by in situ hybridization
(ISH, in blue). Interestingly, dysplasia was found in the penile tissue (H&E, H,
10×, arrow) that was positive for viral DNA by ISH (I, 10×, K, 20×), viral capsid
protein L1 (L, 20×), and E4 protein (J, M, 20×) by
immunohistochemistry.
Infections were found in stomach tissues of mice infected via tail vein with
MmuPV1
Papillomavirus sequences can sometimes be found in cancers of internal organs [5,6,11,12]. Therefore the organs of intravenously infectedmice were
examined by H&E staining, in situ hybridization and immunohistochemistry.
Interestingly, the non-granular stomach tissues of three out of eleven mice were found to
be positive for viral DNA, L1, and E4 proteins (Figure
6). One of the tissues showed a focally extensive plaque lesion of mild to
moderate hyperplasia with atypia (Figure 6A).
Abundant hyperkeratosis with what appeared to be crypt formation was observed. There were
occasional positive nuclei within the stratum spinosum and granulosum with abundant
positive staining of viral DNA, L1, and E4 proteins in the cornified layers. There were
multifocal cytoplasmic hybridization signals within parietal cells in the glandular
stomach. Two stomach tissues displayed a small isolated (possibly pedunculated) focus of
mild hyperplasia with cytological and nuclear atypia (low grade) in the non-glandular
stomach with scattered individual nuclear positive cells (Figure 6D). These tissues were positive for viral DNA (Figure 6B,F, 20×, in blue), viral capsid protein (Figure 6C,G, 20×, in red), and viral E4 protein (Figure 6D,H, 20×, in red). No other organs were found
to be positive for MmuPV1 in these animals. This observation indicates that internal
organs can become infected when the route of viral delivery is via the blood.
Figure 6.
Three (two females and one male) of eleven tested mice were positive for
virus infection in the stomach tissues. Representative stomach tissues were examined
for histology. (A) Within the glandular stomach there is a focally extensive plaque
lesion of mild to moderate hyperplasia with atypia. There is abundant hyperkeratosis
(likely parakeratotic), with what appear to be crypt formation. There are occasional
positive nuclei within the stratum spinosum and granulosum, with abundant positive
staining of the cornified layers. There is multifocal cytoplasmic hybridization with
parietal cells in the glandular stomach. (E) A small isolated (possibly
pedunculated) focus of mild hyperplasia with cytologic and nuclear atypia (low
grade) in the non-glandular stomach with scattered individual nuclear positive
cells. These tissues were positive for viral DNA by in situ
hybridization (ISH, B, F, 20×, in blue), viral capsid protein L1 (IHC, C, G, 20×, in
red), and E4 protein (IHC, D, H, 20×, in red) by immunohistochemistry.
Three (two females and one male) of eleven tested mice were positive for
virus infection in the stomach tissues. Representative stomach tissues were examined
for histology. (A) Within the glandular stomach there is a focally extensive plaque
lesion of mild to moderate hyperplasia with atypia. There is abundant hyperkeratosis
(likely parakeratotic), with what appear to be crypt formation. There are occasional
positive nuclei within the stratum spinosum and granulosum, with abundant positive
staining of the cornified layers. There is multifocal cytoplasmic hybridization with
parietal cells in the glandular stomach. (E) A small isolated (possibly
pedunculated) focus of mild hyperplasia with cytologic and nuclear atypia (low
grade) in the non-glandular stomach with scattered individual nuclear positive
cells. These tissues were positive for viral DNA by in situ
hybridization (ISH, B, F, 20×, in blue), viral capsid protein L1 (IHC, C, G, 20×, in
red), and E4 protein (IHC, D, H, 20×, in red) by immunohistochemistry.
Transfusion of naïve mice with blood from mice with MmuPV1 infections yielded tumours
at prewounded sites
We next examined the ability of mice with infections to transmit the disease to naïve
animals via blood transfusion. Two infectedmice (one male and one female) were sacrificed
seven months after IV infection and 0.2 ml of blood (<1 × 104 viral copies
in total) from each animal was transfused via tail vein injection into three male (M1–M3)
and three female (F1–F3) littermates. The injection sites were treated topically with
neutralizing monoclonal antibody (MPV.A4) immediately post injection. At ten weeks post
infection, all recipients were positive for viral infection and tumour growth at all of
the wounded sites (Figure 7A–D). No lesions
developed at the sites of injection. The tissues were positive for viral DNA (Figure 7F) and E4 protein (Figure 7G). One stomach tissue was found to be positive
for viral DNA (ISH, 60×, in blue) and capsid protein (IHC,
arrows, 60×, in red, Figure 7E). Thus, blood from
animals with papillomavirus infections can transmit infections to naïve animals. Infection
sites include the stomach.
Figure 7.
Blood of MmuPV1 infected mice with skin tumours was infectious at seven
months post initial IV injection. Each naïve littermate transfused by IV injection
of 0.2 mL of blood (<1 × 104 viral copies) from two infected mice
sacrificed seven months after initial IV MmuPV1 infection was examined weekly for
tumour growth at the pre-wounded skin area. (A, B) Representative tumour growth
(arrows) at the muzzle and the tail of naïve Hsd: Nu female (A) and male (B) mice at
week sixteen post blood transfusion. Viral DNA was detected at the vaginal (V), anal
(A) and oral (O) sites in three females (C, F1-F3) and the penile (P), anal (A) and
oral (O) sites in three male (D, M1-M3) mice by qPCR. Mucosal sites of these mice
(the vagina, anus, tongue, and penile) were positive for viral DNA by in situ
hybridization (F, arrows, 20×, in blue). These tissues were positive for viral E4
protein (G, 20×, in red). One of the females was positive for viral DNA (ISH arrows,
60×, in blue) and viral capsid protein L1 (IHC, arrows, 60×, in red) in the stomach
tissues (E).
Blood of MmuPV1 infectedmice with skin tumours was infectious at seven
months post initial IV injection. Each naïve littermate transfused by IV injection
of 0.2 mL of blood (<1 × 104 viral copies) from two infectedmice
sacrificed seven months after initial IV MmuPV1 infection was examined weekly for
tumour growth at the pre-wounded skin area. (A, B) Representative tumour growth
(arrows) at the muzzle and the tail of naïve Hsd: Nu female (A) and male (B) mice at
week sixteen post blood transfusion. Viral DNA was detected at the vaginal (V), anal
(A) and oral (O) sites in three females (C, F1-F3) and the penile (P), anal (A) and
oral (O) sites in three male (D, M1-M3) mice by qPCR. Mucosal sites of these mice
(the vagina, anus, tongue, and penile) were positive for viral DNA by in situ
hybridization (F, arrows, 20×, in blue). These tissues were positive for viral E4
protein (G, 20×, in red). One of the females was positive for viral DNA (ISH arrows,
60×, in blue) and viral capsid protein L1 (IHC, arrows, 60×, in red) in the stomach
tissues (E).
Viral DNA was detected in blood samples of CRPV infected rabbits and MmuPV1 infected
athymic mice
To check for a viral DNA signature in the blood of infected animals, PCR and rolling
circle amplification and DNA sequencing were performed to evaluate the presence of CRPV or
MmuPV1 DNA in the blood of both locally and IV infected rabbits and mice. Viral DNA was
detected in the whole blood of both rabbits (12/29) and mice (8/12). The highest viral
titre in the rabbit and mouse blood samples was approximately 1 × 105 copies/ml
and 1 × 106 copies/ml respectively. 12 of 31 mouse serum samples also tested
positive for viral sequences but none of the rabbit sera were positive. The highest viral
titre in the mouse serum sample is 2 × 105 copies/ml.
Discussion
In this study we examined the significance of papillomavirus infection in the blood. If
papillomaviruses can be transmitted via the blood, patients could be at risk of HPVinfections [42,43]. Blood is routinely screened for human immunodeficiency virus
(HIV), hepatitis C (HCV), and hepatitis B (HBV). Procedures are being developed to detect
emerging viruses such as Dengue and Zika [44].
However, there is no screening for HPVs. HPV was detected in the blood of a subset of
sexually naïve children with hemophilia who had received multiple transfusions [1]. HPV sequences are sometimes found in tumours of
internal organs such as the stomach, prostate, breast, colon, bladder, esophagus, and lung
[3,9,11,45-49]. We asked
whether these observations could be due to transmission of the virus through the blood.All papillomaviruses are highly species specific. Therefore, a human papillomavirus cannot
infect any animal [50]. Our laboratory has
expertise in both the CRPV/rabbit and the MmuPV1/mouse models [15,16]. Armed with these
preclinical models, we demonstrated that (1) Viral sequences could be
detected in the blood of infected animals; (2) Virus introduced into the blood yielded
tumours at both cutaneous and mucosal sites; (3) CRPV DNA introduced into the blood yielded
papillomas at prepared skin sites; (4) Similar mechanisms are used for infections via the
blood and by direct application of virus to the skin as determined by RNA-seq analysis; (5)
Transfusion of blood from an animal that had received virus via intravenous infection to a
naïve sibling resulted in papillomas in the transfusion recipient; (6) Virus introduced via
intravenous delivery yielded infections at the stomach as well as the normally permissive
sites, and (7) Blood from animals with active infections could induce infections in naïve
mice when transfused into these animals.We conducted RNA-seq analysis to compare the transcriptomes of CRPV tumours induced by
local skin infection and IV infection. The patterns of viral transcription in the tumours
were similar for both routes of infections. Most of the genes with significantly
differential expression were common to all tumours examined by RNA-seq providing evidence
that mechanisms for papillomavirus IV infection and local infection are similar. RT-qPCR and
Western blotting selectively verified a subset of those genes with altered expression. For
example, increased expression of S100A9 (S100 Calcium Binding Protein A9), SDR9C7 (Short
Chain Dehydrogenase/Reductase Family 9C Member 7) and FABP9 (Fatty Acid Binding Protein 9)
that promote cell proliferation and tumour cell migration [51,52], and KRT16
(stress keratin 16) and IL-36G (interleukin 36 gamma) that promote anti-tumour immune
responses [53] was found in all CRPV-induced
tumours. Decreased expression of SLN (Sarcolipin), TAC1 (Tachykinin Precursor 1), MYH8
(Myosin Heavy Chain 8), PGAM2 (Phosphoglycerate Mutase 2) and APOBEC2 (apolipoprotein-B
mRNA-editing catalytic polypeptide 2) was observed in all tumours potentially leading to
disruption of calcium homeostasis, signalling pathways, and sugar metabolism [54,55]. We
postulate that reduced expression of APOBEC2 may prevent or reduce C-to-U editing, as
described for APOBEC3 for human papillomavirus, thereby minimizing hypermutations into the
CRPV genome and facilitating cancer progression [56,57].Most individuals acquire papillomavirus infections at some point in their lifetimes [58]. Sexually transmitted infections are common in
young people. Most papillomavirus infections are thought to clear spontaneously, but the
process often occurs over a considerable time period [59]. It is possible that virus from acute or latent infections makes its way, in
some yet to be determined manner, into the blood stream [60]. Our results from animal studies would support this. Because we demonstrated
in this study that both viral DNA and virions injected into the blood stream could induce
tumours, we did not treat transfusion samples with an agent such as Benzonase to remove
externally bound DNA or RNA prior to transfusion. Transfusion of this blood containing
either virions or viral DNA into another individual, especially one with a compromised
immune system, could pose a risk of infection to the recipient. These infections might
manifest not only in the genital sites normally associated with the virus but also in
distant vital organs, as shown in this paper where the virus was found in the stomachs of
four different animals.The link between a blood transfusion and an infection or cancer that manifests much later
in life would not be easy to detect in hindsight. In view of the results presented here, it
would seem prudent to conduct studies on human blood samples to ascertain the need for
routine screening to assure safety of the blood supply.
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