Literature DB >> 31339624

Unconventional Metal-Framework Interaction in MgSi5.

Julia-Maria Hübner1, Wilder Carrillo-Cabrera1, Yurii Prots1, Matej Bobnar1, Ulrich Schwarz1, Yuri Grin1.   

Abstract

The silicon-rich cage compound MgSi5 was obtained by high-pressure high-temperature synthesis. Initial crystal structure determination by electron diffraction tomography provided the basis for phase analyses in the process of synthesis optimization, finally facilitating the growth of single crystals suitable for X-ray diffraction experiments. The crystal structure of MgSi5 (space group Cmme, Pearson notation oS24, a=4.4868(2) Å, b=10.1066(5) Å, and c=9.0753(4) Å) constitutes a new type of framework of four-bonded silicon atoms forming Si15 cages enclosing the Mg atoms. Two types of smaller Si8 cages remain empty. The atomic interactions are characterized by two-center two-electron bonds within the silicon framework. In addition, there is evidence for multi-center Mg-Si bonding in the large cavities of the framework and for lone-pair-like interactions in the smaller empty voids.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  cage compounds; chemical bonding; high-pressure synthesis; magnesium; silicon

Year:  2019        PMID: 31339624      PMCID: PMC6899931          DOI: 10.1002/anie.201907432

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


Intermetallic framework compounds1 constitute fascinating inorganic phases, in which a majority of framework atoms enclose a minority of guest species. In recent years, this class of materials attracted significant interest in preparative solid‐state chemistry and current basic materials science research because several members exhibit beneficial thermoelectric or superconducting properties.2 The structural organization covers a wide variety of compositions involving three‐dimensional frameworks usually based on four‐bonded tetrel atoms such as Si, Ge, or Sn. Generally, the connectivity of the network atoms is related to the electron count by the 8−N rule although silicon compounds may tolerate a certain electron excess.3 Typically, members of the alkaline, alkali‐earth, or rare‐earth metal groups act as cationic guest species. However, magnesium constitutes an exception as the metal tends to participate in the anionic network, for example, in TiNiSi‐type CaMgSi or BaAl4‐type phases such as EuGa4−Mg.4 At ambient pressure, the binary system MgSi shows (anti‐)fluorite‐type Mg2Si as the only phase,5 and also ternary magnesiumsilicon compounds tend to evade clathrate‐like frameworks.4, 6 However, high‐pressure synthesis techniques provide valuable tools for advancing the spectrum of accessible tetrel frameworks regarding network topology and chemical composition.7, 8 Herein, we report on the synthesis, crystal structure, and chemical bonding of a silicon framework embedding cationic magnesium in a binary compound. MgSi5 was obtained by high‐pressure synthesis between 5(1) and 10(1) GPa upon heating to temperatures between 1173(120) K and 1373(150) K and quenching to room temperature before decompression. At normal pressure, the diamagnetic compound decomposed at 468(10) K (see Figures S1 and S2 in the Supporting Information). The new compound was first discovered by scanning electron microscopy (SEM) in form of domains in matrices of hp‐Mg9Si5 and (cF8)Si. Specimens suitable for selected area electron diffraction experiments were prepared by the focused ion beam (FIB) lift‐out technique (Figure 1 and Figure S3). Manual electron diffraction tomography measurements yielded 354 reflections indicating the space group Cmme. Structure solution was performed using 142 symmetry‐independent reflections (Tables S1 and S2).
Figure 1

a) Polished surface of the MgSi5 sample (back‐scattering‐electron scanning electron microscopy image) with arrays of equally oriented domains of MgSi5 (light gray), separated by thin Si layers (dark gray); black frames show the positions of the FIB cuts. b) Surface image after extracting the first FIB cut. c) Second FIB cut soldered to the copper holder. d) Transmission electron microscopy image of a FIB lamella (perpendicular to [001]) showing the area used for electron diffraction tomography (circle). The inset shows the aperture.

a) Polished surface of the MgSi5 sample (back‐scattering‐electron scanning electron microscopy image) with arrays of equally oriented domains of MgSi5 (light gray), separated by thin Si layers (dark gray); black frames show the positions of the FIB cuts. b) Surface image after extracting the first FIB cut. c) Second FIB cut soldered to the copper holder. d) Transmission electron microscopy image of a FIB lamella (perpendicular to [001]) showing the area used for electron diffraction tomography (circle). The inset shows the aperture. The determination of basic crystallographic information and chemical composition set the stage for optimizing the synthesis conditions. Powder diffraction patterns with LaB6 as an internal standard resulted in lattice parameters of a=4.4868(2) Å, b=10.1066(5) Å, and c=9.0753(4) Å. The optimized synthesis produced ingots containing specimen of sufficient size and quality for single crystal X‐ray diffraction. These were isolated from the crude product by leaching with 0.1 m NaOH. Structure refinement with single‐crystal and powder X‐ray diffraction data (Tables S3–S5) shows that MgSi5 represents a new structure type (Pearson notation oS24; Figure 2). The crystal structure can be described as a three‐dimensional framework of four‐bonded (4b) Si atoms with Si15 cages centered by Mg atoms and empty Si8 polyhedra (Figure 2 a). The filled [MgSi15] cages are stacked along [100] and form columns by sharing pentagonal faces (Figure 2 b). The stacking sequence in MgSi5 resembles that of LaSi10 9 and bears pronounced similarity to the arrangement of MSi18 polyhedra in the compounds MSi6 (M=Ca, Sr, Ba, Eu).7 The space between the columns is filled by empty Si8 polyhedra—strongly distorted rhombic antiprisms—of two kinds A and B (Figure 2 a, c, d). The connected Si6/4 boat rings of the type A cavities (Figure 2 c) resemble the proposed atomic arrangement of carbon atoms in sp3 hydrocarbon (2,2) nanotubes.10 The observed distances between 2.379(2) and 2.4742(8) Å between neighboring silicon atoms in MgSi5 (Table S6) are longer than those observed in elemental Si (2.3516 Å11).
Figure 2

Crystal structure of MgSi5: a) Short Si−Si distances indicated by golden lines emphasize the framework of four‐bonded silicon atoms with Si15 cages ([425264], light‐blue) centered by Mg atoms and two kinds of empty cages A and B (light gray). b) Columns of condensed centered [MgSi15] cages. c, d) Face‐sharing empty Si8 cages of types A and B, respectively.

Crystal structure of MgSi5: a) Short SiSi distances indicated by golden lines emphasize the framework of four‐bonded silicon atoms with Si15 cages ([425264], light‐blue) centered by Mg atoms and two kinds of empty cages A and B (light gray). b) Columns of condensed centered [MgSi15] cages. c, d) Face‐sharing empty Si8 cages of types A and B, respectively. According to the Zintl–Klemm concept and the 8−N rule, frameworks containing solely four‐bonded tetrel atoms would not require additional electrons for stabilization. Thus, the electron balance of MgSi5 with (4b)Si atoms may be written as MgSi5=[Mg2+][(4b)Si0]5×2 e− with two excess electrons per formula unit. In a simple picture for a four‐bonded silicon network with electron excess, the electronic density of states (DOS) below the Fermi level would consist of two ranges, which are dominated by s and p states of silicon, respectively, and above a pseudo‐gap‐like minimum, several anti‐bonding states are populated. For example, Ba‐containing clathrates show such a DOS pattern.12 In comparison to that situation, the calculated electronic DOS for MgSi5 reveals distinct differences (Figure 3 a). First, the Si‐s‐ and Si‐p‐dominated regions below the Fermi level can still be recognized by the corresponding atomic contributions, but there is no marked separation like the gap found for Ba clathrates.3, 12
Figure 3

Electronic structure of and chemical bonding in MgSi5: a) Total DOS and atomic contributions of Mg and Si. b) Distribution of partial ELI‐D in the (200) plane and isosurface with pELI‐D=0.077 calculated for the energy window −0.62 eV≤E≤E F. c) Distribution of partial ELI‐D in the (200) plane and isosurface with pELI‐D=0.166 for the energy range −1.56 eV≤E≤−0.62 eV.

Electronic structure of and chemical bonding in MgSi5: a) Total DOS and atomic contributions of Mg and Si. b) Distribution of partial ELI‐D in the (200) plane and isosurface with pELI‐D=0.077 calculated for the energy window −0.62 eV≤E≤E F. c) Distribution of partial ELI‐D in the (200) plane and isosurface with pELI‐D=0.166 for the energy range −1.56 eV≤E≤−0.62 eV. Second, the Fermi level is located almost exactly in the center of a pseudo‐gap, again in contrast to a typical clathrate‐like DOS. Such a situation may arise if “anti‐bonding” states change character because of lone‐pair‐like configurations (“non‐bonding” states) or direct (multi‐center) interactions between silicon and magnesium (bonding states). In line with this picture, the integration of the electronic DOS in the window between −0.62 eV (first dip in the DOS below E F) and the Fermi level yielded quite precisely two electrons per formula unit. These findings of the DOS analysis were used as the starting point for a detailed study of the chemical bonding in MgSi5 by positional‐space quantum‐chemical techniques. The electron density of MgSi5 reveals magnesium species with an almost spherical shape, which according to the quantum theory of atoms in molecules (QTAIM13) indicates a mostly cationic character of the magnesium atoms (Figure 4). However, some characteristics of the distribution differ from that of typical cationic metal species, such as in clathrates.12 Despite the generally convex surface, we note here that the faces in the (100) plane are significantly flattened, which hints at a distinct covalence of the interactions between magnesium and silicon. The effective QTAIM charge of +1.6 for Mg is in good agreement with the large electronegativity difference between Mg and Si. The corresponding charges in other intermetallic compounds of magnesium amount to values between +1.28 and +1.59;14 the calculated results for Mg1−B2 range from +1.4 to +1.6.15 The shapes of the silicon species are more polyhedral‐like, and the flat contact faces between neighboring atoms are typical for non‐polar covalent bonding. The silicon QTAIM atoms have charges between 0.0 and −0.6, revealing an unequal charge transfer from the magnesium to the silicon atoms.
Figure 4

QTAIM atoms and their effective charges in MgSi5.

QTAIM atoms and their effective charges in MgSi5. The distribution of the electron localizability indicator (ELI‐D) reveals the typical picture of four‐bonded silicon atoms. The maxima visualized by the isosurface with ELI‐D=1.44 (Figure 5 a–c) are located on or close to the bond lines between silicon atoms. Moreover, the corresponding basin populations of these attractors (Figure 5 a) amount to values of around two electrons. The intersection of the atomic basins of magnesium with the bonding basins of the SiSi bonds indicate only a small contribution of Mg to three‐atom interactions, as suggested by the location of small parts of the SiSi bonding basins within the atomic basin of Mg (Figure 5 c). A new feature of the ELI‐D appears in vicinity of the Si2 atoms within the cavity labeled B. The local ELI‐D maximum reveals a lone‐pair‐like interaction between neighboring Si2 atoms in the (100) plane across the cavity. Although the population of 0.27 electrons for the according basin (light yellow in Figure 5 b, c) is rather small, its presence is the first hint to additional interactions within the crystal structure. This is also suggested by an analysis of the electronic DOS.
Figure 5

Electron localizability indicator in MgSi5: a) Isosurface of ELI‐D=1.44 (orange disks). b, c) Bond basins Si1−Si3 (red), Si3−Si3 (dark blue), Si2−Si2 (orange), Si2−Si2 (yellow), Si1−Si1 (light blue), and Si2−Si3 (pink) plus the “lone pair” at Si2 (light yellow) together with their electronic populations. c) Overlap of the shapes of QTAIM Mg atoms (transparent pink) with the Si−Si bonding basins reveal only small contributions of the Mg atoms to the Si−Si interactions.

Electron localizability indicator in MgSi5: a) Isosurface of ELI‐D=1.44 (orange disks). b, c) Bond basins Si1Si3 (red), Si3Si3 (dark blue), Si2Si2 (orange), Si2Si2 (yellow), Si1Si1 (light blue), and Si2Si3 (pink) plus the “lone pair” at Si2 (light yellow) together with their electronic populations. c) Overlap of the shapes of QTAIM Mg atoms (transparent pink) with the SiSi bonding basins reveal only small contributions of the Mg atoms to the SiSi interactions. In order to study this finding in more detail, the contributions of electrons in certain energy regions below the Fermi level were investigated by partial ELI‐D (pELI‐D).16 The calculation for states with energies between −0.62 e (first dip in the DOS below E F; Figure 3 a) up to the Fermi level shows main pELI‐D contributions close to the lone‐pair‐like attractor of Si2 in cavity B, confirming that this interaction is supported by magnesium electrons, which stabilize the cavity (Figure 3 b). Further local maxima are found on the bond lines between Mg and Si2 and Si3, revealing multi‐center MgSi interactions within the large cavity of the framework. Finally, large values are also observed within cavity A. Although the pELI‐D values are insufficiently high to form a local maximum, they still suggest a polar—or a lone‐pair‐like—interaction. Both silicon atoms Si2 and Si3 acting within the small cavities have larger negative charges than Si1, which does not interact in the voids. The calculated pELI‐D for the next energy window between −1.56 eV and −0.62 eV (Figure 3 c) reveals mainly contributions to MgSi1 and SiSi bonding, characteristic for cage (clathrate‐like) compounds. In summary, the electronic structure of the silicon‐rich cage compound MgSi5 exhibits distinct differences to typical intermetallic host–guest assemblies despite similar structural features. The calculated electronic density of states of MgSi5 reveals a clear pseudo‐gap around the Fermi level. Chemical bonding is organized in form of conventional two‐center two‐electron bonds within the three‐dimensional silicon framework. In addition, there is evidence for multi‐atom bonding between framework and cage atoms in the large cavities as well as lone‐pair‐like interactions in the smaller empty voids of the framework.

Experimental Section

MgSi5 was obtained by high‐pressure, high‐temperature synthesis between 5(1) and 10(1) GPa upon heating to temperatures between 1173(120) K and 1373(150) K before quenching to ambient conditions (see the Supporting Information). Thin samples prepared from crude ingots by the focused ion beam (FIB) lift‐out technique17 were investigated with transmission electron microscopy by means of selected area electron diffraction data for structure solution (see the Supporting Information).18 Refinements of X‐ray diffraction data were performed with the crystallographic program package WinCSD.19 Electronic band structure calculations (Figure S4) and bonding analysis of MgSi5 were carried out using the experimental values of lattice parameters and atomic coordinates (Tables S3 and S4) employing the program package TB‐LMTO‐ASA (see the Supporting Information).20, 21, 22 Position‐space analysis of the chemical bonding in MgSi5 was performed by means of the electron localizability approach (see the Supporting Information).16, 23, 24, 25, 26

Conflict of interest

The authors declare no conflict of interest. As a service to our authors and readers, this journal provides supporting information supplied by the authors. Such materials are peer reviewed and may be re‐organized for online delivery, but are not copy‐edited or typeset. Technical support issues arising from supporting information (other than missing files) should be addressed to the authors. Supplementary Click here for additional data file.
  14 in total

1.  Features of the electron density in magnesium diboride: reconstruction from X-ray diffraction data and comparison with TB-LMTO and FPLO calculations.

Authors:  V Tsirelson; A Stash; M Kohout; H Rosner; H Mori; S Sato; S Lee; A Yamamoto; S Tajima; Yu Grin
Journal:  Acta Crystallogr B       Date:  2003-09-25

2.  Bonding indicators from electron pair density functionals.

Authors:  Miroslav Kohout
Journal:  Faraday Discuss       Date:  2007       Impact factor: 4.008

3.  Formation of Vacancies in Si- and Ge-based Clathrates: Role of Electron Localization and Symmetry Breaking.

Authors:  Amrita Bhattacharya; Christian Carbogno; Bodo Böhme; Michael Baitinger; Yuri Grin; Matthias Scheffler
Journal:  Phys Rev Lett       Date:  2017-06-06       Impact factor: 9.161

4.  On Fe-Fe Dumbbells in the Ideal and Real Structures of FeGa3.

Authors:  Frank R Wagner; Raul Cardoso-Gil; Benoît Boucher; Maik Wagner-Reetz; Jörg Sichelschmidt; Peter Gille; Michael Baenitz; Yuri Grin
Journal:  Inorg Chem       Date:  2018-10-03       Impact factor: 5.165

5.  Synthesis and Superconductivity of a Strontium Digermanide SrGe2-δ with ThSi2 Structure.

Authors:  Akira Iyo; Izumi Hase; Kenji Kawashima; Shigeyuki Ishida; Hijiri Kito; Nao Takeshita; Kunihiko Oka; Hiroshi Fujihisa; Yoshito Gotoh; Yoshiyuki Yoshida; Hiroshi Eisaki
Journal:  Inorg Chem       Date:  2017-06-28       Impact factor: 5.165

6.  Polar-Covalent Bonding Beyond the Zintl Picture in Intermetallic Rare-Earth Germanides.

Authors:  Riccardo Freccero; Pavlo Solokha; Serena De Negri; Adriana Saccone; Yuri Grin; Frank R Wagner
Journal:  Chemistry       Date:  2019-04-17       Impact factor: 5.236

7.  Smallest nanotube: breaking the symmetry of sp(3) bonds in tubular geometries.

Authors:  D Stojkovic; P Zhang; V H Crespi
Journal:  Phys Rev Lett       Date:  2001-08-28       Impact factor: 9.161

8.  Dumbbells of five-connected silicon atoms and superconductivity in the binary silicides MSi3 (M = Ca, Y, Lu).

Authors:  Ulrich Schwarz; Aron Wosylus; Helge Rosner; Walter Schnelle; Alim Ormeci; Katrin Meier; Alexey Baranov; Michael Nicklas; Susann Leipe; Carola J Müller; Yuri Grin
Journal:  J Am Chem Soc       Date:  2012-08-09       Impact factor: 15.419

9.  Charge decomposition analysis of the electron localizability indicator: a bridge between the orbital and direct space representation of the chemical bond.

Authors:  Frank R Wagner; Viktor Bezugly; Miroslav Kohout; Yuri Grin
Journal:  Chemistry       Date:  2007       Impact factor: 5.236

10.  Unconventional Metal-Framework Interaction in MgSi5.

Authors:  Julia-Maria Hübner; Wilder Carrillo-Cabrera; Yurii Prots; Matej Bobnar; Ulrich Schwarz; Yuri Grin
Journal:  Angew Chem Int Ed Engl       Date:  2019-08-19       Impact factor: 15.336

View more
  3 in total

1.  Unconventional Metal-Framework Interaction in MgSi5.

Authors:  Julia-Maria Hübner; Wilder Carrillo-Cabrera; Yurii Prots; Matej Bobnar; Ulrich Schwarz; Yuri Grin
Journal:  Angew Chem Int Ed Engl       Date:  2019-08-19       Impact factor: 15.336

2.  Crystal Structure and Physical Properties of the Cage Compound Hf2B2-2δIr5+δ.

Authors:  Olga Sichevych; Sever Flipo; Alim Ormeci; Matej Bobnar; Lev Akselrud; Yurii Prots; Ulrich Burkhardt; Roman Gumeniuk; Andreas Leithe-Jasper; Yuri Grin
Journal:  Inorg Chem       Date:  2020-09-18       Impact factor: 5.165

3.  In-Cage Interactions in the Clathrate Superconductor Sr8 Si46.

Authors:  Julia-Maria Hübner; Yurii Prots; Walter Schnelle; Matej Bobnar; Markus König; Michael Baitinger; Paul Simon; Wilder Carrillo-Cabrera; Alim Ormeci; Eteri Svanidze; Yuri Grin; Ulrich Schwarz
Journal:  Chemistry       Date:  2019-12-12       Impact factor: 5.236

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.