Literature DB >> 31338389

Unsupervised clustering method to convert high-resolution magnetic resonance volumes to three-dimensional acoustic models for full-wave ultrasound simulations.

Kevin Looby1, Carl D Herickhoff2, Christopher Sandino3, Tao Zhang4, Shreyas Vasanawala2, Jeremy J Dahl2.   

Abstract

Simulations of acoustic wave propagation, including both the forward and the backward propagations of the wave (also known as full-wave simulations), are increasingly utilized in ultrasound imaging due to their ability to more accurately model important acoustic phenomena. Realistic anatomic models, particularly those of the abdominal wall, are needed to take full advantage of the capabilities of these simulation tools. We describe a method for converting fat-water-separated magnetic resonance imaging (MRI) volumes to anatomical models for ultrasound simulations. These acoustic models are used to map acoustic imaging parameters, such as speed of sound and density, to grid points in an ultrasound simulation. The tissues of these models are segmented from the MRI volumes into five primary classes of tissue in the human abdominal wall (skin, fat, muscle, connective tissue, and nontissue). This segmentation is achieved using an unsupervised machine learning algorithm, fuzzy c-means clustering (FCM), on a multiscale feature representation of the MRI volumes. We describe an automated method for utilizing FCM weights to produce a model that achieves ∼ 90 % agreement with manual segmentation. Two-dimensional (2-D) and three-dimensional (3-D) full-wave nonlinear ultrasound simulations are conducted, demonstrating the utility of realistic 3-D abdominal wall models over previously available 2-D abdominal wall models.

Entities:  

Keywords:  machine learning; modeling; simulation; ultrasound

Year:  2019        PMID: 31338389      PMCID: PMC6643101          DOI: 10.1117/1.JMI.6.3.037001

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  22 in total

1.  Adaptive fuzzy segmentation of magnetic resonance images.

Authors:  D L Pham; J L Prince
Journal:  IEEE Trans Med Imaging       Date:  1999-09       Impact factor: 10.048

2.  A modified fuzzy C-means algorithm for bias field estimation and segmentation of MRI data.

Authors:  Mohamed N Ahmed; Sameh M Yamany; Nevin Mohamed; Aly A Farag; Thomas Moriarty
Journal:  IEEE Trans Med Imaging       Date:  2002-03       Impact factor: 10.048

3.  Simulation of ultrasonic focus aberration and correction through human tissue.

Authors:  Makoto Tabei; T Douglas Mast; Robert C Waag
Journal:  J Acoust Soc Am       Date:  2003-02       Impact factor: 1.840

4.  k-Wave: MATLAB toolbox for the simulation and reconstruction of photoacoustic wave fields.

Authors:  Bradley E Treeby; B T Cox
Journal:  J Biomed Opt       Date:  2010 Mar-Apr       Impact factor: 3.170

5.  Dual-echo Dixon imaging with flexible choice of echo times.

Authors:  Holger Eggers; Bernhard Brendel; Adri Duijndam; Gwenael Herigault
Journal:  Magn Reson Med       Date:  2011-01       Impact factor: 4.668

6.  Fuzzy c-means clustering with spatial information for image segmentation.

Authors:  Keh-Shih Chuang; Hong-Long Tzeng; Sharon Chen; Jay Wu; Tzong-Jer Chen
Journal:  Comput Med Imaging Graph       Date:  2005-12-19       Impact factor: 4.790

7.  Two dimensional ultrasonic beam distortion in the breast: in vivo measurements and effects.

Authors:  P D Freiburger; D C Sullivan; B H LeBlanc; S W Smith; G E Trahey
Journal:  Ultrason Imaging       Date:  1992-10       Impact factor: 1.578

8.  Three-dimensional modeling of hearing in Delphinus delphis.

Authors:  J L Aroyan
Journal:  J Acoust Soc Am       Date:  2001-12       Impact factor: 1.840

9.  Large-scale propagation of ultrasound in a 3-D breast model based on high-resolution MRI data.

Authors:  Gheorghe Salahura; Jason C Tillett; Leon A Metlay; Robert C Waag
Journal:  IEEE Trans Biomed Eng       Date:  2010-02-17       Impact factor: 4.538

10.  Quantitative assessment of the magnitude, impact and spatial extent of ultrasonic clutter.

Authors:  Muyinatu A Lediju; Michael J Pihl; Jeremy J Dahl; Gregg E Trahey
Journal:  Ultrason Imaging       Date:  2008-07       Impact factor: 1.578

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  1 in total

Review 1.  Virtual clinical trials in medical imaging: a review.

Authors:  Ehsan Abadi; William P Segars; Benjamin M W Tsui; Paul E Kinahan; Nick Bottenus; Alejandro F Frangi; Andrew Maidment; Joseph Lo; Ehsan Samei
Journal:  J Med Imaging (Bellingham)       Date:  2020-04-11
  1 in total

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