Literature DB >> 31332006

Membraneless polyester microdroplets as primordial compartments at the origins of life.

Tony Z Jia1,2, Kuhan Chandru1,3,4, Yayoi Hongo5, Rehana Afrin5, Tomohiro Usui5,6, Kunihiro Myojo7, H James Cleaves5,2,8,9.   

Abstract

Compartmentalization was likely essential for primitive chemical systems during the emergence of life, both for preventing leakage of important components, i.e., genetic materials, and for enhancing chemical reactions. Although life as we know it uses lipid bilayer-based compartments, the diversity of prebiotic chemistry may have enabled primitive living systems to start from other types of boundary systems. Here, we demonstrate membraneless compartmentalization based on prebiotically available organic compounds, α-hydroxy acids (αHAs), which are generally coproduced along with α-amino acids in prebiotic settings. Facile polymerization of αHAs provides a model pathway for the assembly of combinatorially diverse primitive compartments on early Earth. We characterized membraneless microdroplets generated from homo- and heteropolyesters synthesized from drying solutions of αHAs endowed with various side chains. These compartments can preferentially and differentially segregate and compartmentalize fluorescent dyes and fluorescently tagged RNA, providing readily available compartments that could have facilitated chemical evolution by protecting, exchanging, and encapsulating primitive components. Protein function within and RNA function in the presence of certain droplets is also preserved, suggesting the potential relevance of such droplets to various origins of life models. As a lipid amphiphile can also assemble around certain droplets, this further shows the droplets' potential compatibility with and scaffolding ability for nascent biomolecular systems that could have coexisted in complex chemical systems. These model compartments could have been more accessible in a "messy" prebiotic environment, enabling the localization of a variety of protometabolic and replication processes that could be subjected to further chemical evolution before the advent of the Last Universal Common Ancestor.

Entities:  

Keywords:  membraneless compartments; origins of life; polyesters; prebiotic chemistry; self-assembly

Year:  2019        PMID: 31332006      PMCID: PMC6690027          DOI: 10.1073/pnas.1902336116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

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Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

5.  High molecular diversity of extraterrestrial organic matter in Murchison meteorite revealed 40 years after its fall.

Authors:  Philippe Schmitt-Kopplin; Zelimir Gabelica; Régis D Gougeon; Agnes Fekete; Basem Kanawati; Mourad Harir; Istvan Gebefuegi; Gerhard Eckel; Norbert Hertkorn
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-16       Impact factor: 11.205

6.  Effect of ions on the hydrophobic interaction between two plates.

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Review 7.  Molecular mechanism of Thioflavin-T binding to amyloid fibrils.

Authors:  Matthew Biancalana; Shohei Koide
Journal:  Biochim Biophys Acta       Date:  2010-04-22

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Authors:  David Deamer; Arthur L Weber
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-02       Impact factor: 10.005

9.  Rise in the pH of an unfrozen solution in ice due to the presence of NaCl and promotion of decomposition of gallic acids owing to a change in the pH.

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Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-03       Impact factor: 11.205

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  18 in total

1.  Spontaneous Formation of Functional Structures in Messy Environments.

Authors:  Christian Mayer
Journal:  Life (Basel)       Date:  2022-05-11

2.  Proliferating coacervate droplets as the missing link between chemistry and biology in the origins of life.

Authors:  Muneyuki Matsuo; Kensuke Kurihara
Journal:  Nat Commun       Date:  2021-09-24       Impact factor: 17.694

3.  Dynamic Exchange of Substituents in a Prebiotic Organocatalyst: Initial Steps towards an Evolutionary System.

Authors:  Anna C Closs; Maximilian Bechtel; Oliver Trapp
Journal:  Angew Chem Int Ed Engl       Date:  2021-11-27       Impact factor: 16.823

4.  Mutually stabilizing interactions between proto-peptides and RNA.

Authors:  Moran Frenkel-Pinter; Jay W Haynes; Ahmad M Mohyeldin; Martin C; Alyssa B Sargon; Anton S Petrov; Ramanarayanan Krishnamurthy; Nicholas V Hud; Loren Dean Williams; Luke J Leman
Journal:  Nat Commun       Date:  2020-06-19       Impact factor: 14.919

Review 5.  Primitive Compartmentalization for the Sustainable Replication of Genetic Molecules.

Authors:  Ryo Mizuuchi; Norikazu Ichihashi
Journal:  Life (Basel)       Date:  2021-02-28

6.  The Grayness of the Origin of Life.

Authors:  Hillary H Smith; Andrew S Hyde; Danielle N Simkus; Eric Libby; Sarah E Maurer; Heather V Graham; Christopher P Kempes; Barbara Sherwood Lollar; Luoth Chou; Andrew D Ellington; G Matthew Fricke; Peter R Girguis; Natalie M Grefenstette; Chad I Pozarycki; Christopher H House; Sarah Stewart Johnson
Journal:  Life (Basel)       Date:  2021-05-29

7.  Polyesters as a Model System for Building Primitive Biologies from Non-Biological Prebiotic Chemistry.

Authors:  Kuhan Chandru; Irena Mamajanov; H James Cleaves; Tony Z Jia
Journal:  Life (Basel)       Date:  2020-01-19

Review 8.  Biological phase separation: cell biology meets biophysics.

Authors:  Takuya Yoshizawa; Ryu-Suke Nozawa; Tony Z Jia; Tomohide Saio; Eiichiro Mori
Journal:  Biophys Rev       Date:  2020-03-18

Review 9.  Connecting primitive phase separation to biotechnology, synthetic biology, and engineering.

Authors:  Tony Z Jia; Po-Hsiang Wang; Tatsuya Niwa; Irena Mamajanov
Journal:  J Biosci       Date:  2021       Impact factor: 1.826

10.  Directing Transition of Synthetic Protocell Models via Physicochemical Cues-Triggered Interfacial Dynamic Covalent Chemistry.

Authors:  Yanglimin Ji; Wenjing Mu; Hua Wu; Yan Qiao
Journal:  Adv Sci (Weinh)       Date:  2021-07-28       Impact factor: 16.806

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