Literature DB >> 31331762

What are the methodological and theoretical prospects for paramagnetic NMR in structural biology? A glimpse into the crystal ball.

Enrico Ravera1, Giacomo Parigi1, Claudio Luchinat2.   

Abstract

NMR spectroscopy is very sensitive to the presence of unpaired electrons, which perturb the NMR chemical shifts, J splittings and nuclear relaxation rates. These paramagnetic effects have attracted increasing attention over the last decades, and their use is expected to increase further in the future because they can provide structural information not easily achievable with other techniques. In fact, paramagnetic data provide long range structural restraints that can be used to assess the accuracy of crystal structures in solution and to improve them by simultaneous refinements with the X-ray data. They are also precious for obtaining information on the conformational variability of biomolecular systems, possibly in conjunction with SAXS and/or DEER data. We foresee that new tools will be developed in the next years for the simultaneous analysis of the paramagnetic data with data obtained from different techniques, in order to take advantage synergistically of the information content of all of them. Of course, the use of the paramagnetic data for structural purposes requires the knowledge of the relationship between these data and the molecular coordinates. Recently, the equations commonly used, dating back to half a century ago, have been questioned by first principle quantum chemistry calculations. Our prediction is that further theoretical/computational improvements will essentially confirm the validity of the old semi-empirical equations for the analysis of the experimental paramagnetic data.
Copyright © 2019 Elsevier Inc. All rights reserved.

Keywords:  Integrated structural biology; Magnetic susceptibility anisotropy; Pseudocontact shift; REFMAC-NMR; pNMR

Year:  2019        PMID: 31331762     DOI: 10.1016/j.jmr.2019.07.027

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  3 in total

Review 1.  Paramagnetic Chemical Probes for Studying Biological Macromolecules.

Authors:  Qing Miao; Christoph Nitsche; Henry Orton; Mark Overhand; Gottfried Otting; Marcellus Ubbink
Journal:  Chem Rev       Date:  2022-01-27       Impact factor: 72.087

2.  The Photocatalyzed Thiol-ene reaction: A New Tag to Yield Fast, Selective and reversible Paramagnetic Tagging of Proteins.

Authors:  Maxime Denis; Charlotte Softley; Stefano Giuntini; Matteo Gentili; Enrico Ravera; Giacomo Parigi; Marco Fragai; Grzegorz Popowicz; Michael Sattler; Claudio Luchinat; Linda Cerofolini; Cristina Nativi
Journal:  Chemphyschem       Date:  2020-03-19       Impact factor: 3.102

3.  Solution of a Puzzle: High-Level Quantum-Chemical Treatment of Pseudocontact Chemical Shifts Confirms Classic Semiempirical Theory.

Authors:  Lucas Lang; Enrico Ravera; Giacomo Parigi; Claudio Luchinat; Frank Neese
Journal:  J Phys Chem Lett       Date:  2020-09-30       Impact factor: 6.475

  3 in total

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