Literature DB >> 31325067

Denoising and artefact removal for transthoracic echocardiographic imaging in congenital heart disease: utility of diagnosis specific deep learning algorithms.

Gerhard-Paul Diller1,2,3, Astrid E Lammers4,5,6, Sonya Babu-Narayan7, Wei Li7, Robert M Radke4, Helmut Baumgartner4,5, Michael A Gatzoulis7, Stefan Orwat4,5.   

Abstract

Deep learning (DL) algorithms are increasingly used in cardiac imaging. We aimed to investigate the utility of DL algorithms in de-noising transthoracic echocardiographic images and removing acoustic shadowing artefacts specifically in patients with congenital heart disease (CHD). In addition, the performance of DL algorithms trained on CHD samples was compared to models trained entirely on structurally normal hearts. Deep neural network based autoencoders were built for denoising and removal of acoustic shadowing artefacts based on routine echocardiographic apical 4-chamber views and performance was assessed by visual assessment and quantifying cross entropy. 267 subjects (94 TGA and atrial switch and 39 with ccTGA, 10 Ebstein anomaly, 9 with uncorrected AVSD and 115 normal controls; 56.9% male, age 38.9 ± 15.6 years) with routine transthoracic examinations were included. The autoencoders significantly enhanced image quality across diagnostic subgroups (p < 0.005 for all). Models trained on congenital heart samples performed significantly better when exposed to examples from congenital heart disease patients. Our study demonstrates the potential of autoencoders for denoising and artefact removal in patients with congenital heart disease and structurally normal hearts. While models trained entirely on samples from structurally normal hearts perform reasonably in CHD, our data illustrates the value of dedicated image augmentation systems trained specifically on CHD samples.

Entities:  

Keywords:  Adult congenital heart disease; Autoencoder; Congenital heart disease; De-noising; Deep-learning; Echocardiography

Year:  2019        PMID: 31325067     DOI: 10.1007/s10554-019-01671-0

Source DB:  PubMed          Journal:  Int J Cardiovasc Imaging        ISSN: 1569-5794            Impact factor:   2.357


  13 in total

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Authors:  Helmut Baumgartner; Philipp Bonhoeffer; Natasja M S De Groot; Fokko de Haan; John Erik Deanfield; Nazzareno Galie; Michael A Gatzoulis; Christa Gohlke-Baerwolf; Harald Kaemmerer; Philip Kilner; Folkert Meijboom; Barbara J M Mulder; Erwin Oechslin; Jose M Oliver; Alain Serraf; Andras Szatmari; Erik Thaulow; Pascal R Vouhe; Edmond Walma
Journal:  Eur Heart J       Date:  2010-08-27       Impact factor: 29.983

2.  Recommendations for chamber quantification: a report from the American Society of Echocardiography's Guidelines and Standards Committee and the Chamber Quantification Writing Group, developed in conjunction with the European Association of Echocardiography, a branch of the European Society of Cardiology.

Authors:  Roberto M Lang; Michelle Bierig; Richard B Devereux; Frank A Flachskampf; Elyse Foster; Patricia A Pellikka; Michael H Picard; Mary J Roman; James Seward; Jack S Shanewise; Scott D Solomon; Kirk T Spencer; Martin St John Sutton; William J Stewart
Journal:  J Am Soc Echocardiogr       Date:  2005-12       Impact factor: 5.251

Review 3.  Artificial Intelligence in Cardiology.

Authors:  Kipp W Johnson; Jessica Torres Soto; Benjamin S Glicksberg; Khader Shameer; Riccardo Miotto; Mohsin Ali; Euan Ashley; Joel T Dudley
Journal:  J Am Coll Cardiol       Date:  2018-06-12       Impact factor: 24.094

Review 4.  Deep learning.

Authors:  Yann LeCun; Yoshua Bengio; Geoffrey Hinton
Journal:  Nature       Date:  2015-05-28       Impact factor: 49.962

5.  2018 AHA/ACC Guideline for the Management of Adults With Congenital Heart Disease: A Report of the American College of Cardiology/American Heart Association Task Force on Clinical Practice Guidelines.

Authors:  Karen K Stout; Curt J Daniels; Jamil A Aboulhosn; Biykem Bozkurt; Craig S Broberg; Jack M Colman; Stephen R Crumb; Joseph A Dearani; Stephanie Fuller; Michelle Gurvitz; Paul Khairy; Michael J Landzberg; Arwa Saidi; Anne Marie Valente; George F Van Hare
Journal:  Circulation       Date:  2019-04-02       Impact factor: 29.690

6.  Utility of machine learning algorithms in assessing patients with a systemic right ventricle.

Authors:  Gerhard-Paul Diller; Sonya Babu-Narayan; Wei Li; Jelena Radojevic; Aleksander Kempny; Anselm Uebing; Konstantinos Dimopoulos; Helmut Baumgartner; Michael A Gatzoulis; Stefan Orwat
Journal:  Eur Heart J Cardiovasc Imaging       Date:  2019-08-01       Impact factor: 6.875

7.  Fast and accurate view classification of echocardiograms using deep learning.

Authors:  Ali Madani; Ramy Arnaout; Mohammad Mofrad; Rima Arnaout
Journal:  NPJ Digit Med       Date:  2018-03-21

8.  Real-time cardiovascular MR with spatio-temporal artifact suppression using deep learning-proof of concept in congenital heart disease.

Authors:  Andreas Hauptmann; Simon Arridge; Felix Lucka; Vivek Muthurangu; Jennifer A Steeden
Journal:  Magn Reson Med       Date:  2018-09-08       Impact factor: 4.668

9.  Deep echocardiography: data-efficient supervised and semi-supervised deep learning towards automated diagnosis of cardiac disease.

Authors:  Ali Madani; Jia Rui Ong; Anshul Tibrewal; Mohammad R K Mofrad
Journal:  NPJ Digit Med       Date:  2018-10-18

Review 10.  Consensus recommendations for echocardiography in adults with congenital heart defects from the International Society of Adult Congenital Heart Disease (ISACHD).

Authors:  Wei Li; Cathy West; Jackie McGhie; Annemien E van den Bosch; Sonya V Babu-Narayan; Folkert Meijboom; Francois-Pierre Mongeon; Paul Khairy; Thomas R Kimball; Luc M Beauchesne; Naser M Ammash; Gruschen R Veldtman; Erwin Oechslin; Michael A Gatzoulis; Gary Webb
Journal:  Int J Cardiol       Date:  2018-07-11       Impact factor: 4.164

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  3 in total

Review 1.  The role of machine learning applications in diagnosing and assessing critical and non-critical CHD: a scoping review.

Authors:  Stephanie M Helman; Elizabeth A Herrup; Adam B Christopher; Salah S Al-Zaiti
Journal:  Cardiol Young       Date:  2021-11-02       Impact factor: 1.093

2.  Retraining Convolutional Neural Networks for Specialized Cardiovascular Imaging Tasks: Lessons from Tetralogy of Fallot.

Authors:  Animesh Tandon; Navina Mohan; Cory Jensen; Barbara E U Burkhardt; Vasu Gooty; Daniel A Castellanos; Paige L McKenzie; Riad Abou Zahr; Abhijit Bhattaru; Mubeena Abdulkarim; Alborz Amir-Khalili; Alireza Sojoudi; Stephen M Rodriguez; Jeanne Dillenbeck; Gerald F Greil; Tarique Hussain
Journal:  Pediatr Cardiol       Date:  2021-01-04       Impact factor: 1.655

Review 3.  Machine Learning and the Future of Cardiovascular Care: JACC State-of-the-Art Review.

Authors:  Giorgio Quer; Ramy Arnaout; Michael Henne; Rima Arnaout
Journal:  J Am Coll Cardiol       Date:  2021-01-26       Impact factor: 24.094

  3 in total

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