Literature DB >> 31323485

Short RNA regulators: the past, the present, the future, and implications for precision medicine and health disparities.

Isidore Rigoutsos1, Eric Londin2, Yohei Kirino3.   

Abstract

We herein provide a brief review of the trajectory that the field of short RNA research followed in the last 25 years. We place emphasis on the unexpected discoveries and the ramifications of these discoveries for the field, as well as offer some thoughts about what the next 25 years may bring. Arguably, the uncovered dependence of different types of short RNAs on individual attributes such as a person's sex, population origin, race, and on tissue type, tissue state, and disease was most unexpected. This dependence has important ramifications in that it will provide a boost to our understanding of the molecular mechanisms of health disparities as well as pave the way for novel approaches to designing improved and personalized diagnostics and therapeutics.
Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2019        PMID: 31323485      PMCID: PMC7181343          DOI: 10.1016/j.copbio.2019.05.014

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  111 in total

1.  Vertebrate microRNA genes.

Authors:  Lee P Lim; Margaret E Glasner; Soraya Yekta; Christopher B Burge; David P Bartel
Journal:  Science       Date:  2003-03-07       Impact factor: 47.728

Review 2.  MicroRNA-cancer connection: the beginning of a new tale.

Authors:  George Adrian Calin; Carlo Maria Croce
Journal:  Cancer Res       Date:  2006-08-01       Impact factor: 12.701

3.  A bulged lin-4/lin-14 RNA duplex is sufficient for Caenorhabditis elegans lin-14 temporal gradient formation.

Authors:  I Ha; B Wightman; G Ruvkun
Journal:  Genes Dev       Date:  1996-12-01       Impact factor: 11.361

4.  Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans.

Authors:  B Wightman; I Ha; G Ruvkun
Journal:  Cell       Date:  1993-12-03       Impact factor: 41.582

5.  Stress induces tRNA cleavage by angiogenin in mammalian cells.

Authors:  Hanjiang Fu; Junjun Feng; Qin Liu; Fang Sun; Yi Tie; Jie Zhu; Ruiyun Xing; Zhixian Sun; Xiaofei Zheng
Journal:  FEBS Lett       Date:  2008-12-27       Impact factor: 4.124

6.  The biogenesis pathway of tRNA-derived piRNAs in Bombyx germ cells.

Authors:  Shozo Honda; Takuya Kawamura; Phillipe Loher; Keisuke Morichika; Isidore Rigoutsos; Yohei Kirino
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

7.  MINTmap: fast and exhaustive profiling of nuclear and mitochondrial tRNA fragments from short RNA-seq data.

Authors:  Phillipe Loher; Aristeidis G Telonis; Isidore Rigoutsos
Journal:  Sci Rep       Date:  2017-02-21       Impact factor: 4.379

8.  tRNA-derived fragments target the ribosome and function as regulatory non-coding RNA in Haloferax volcanii.

Authors:  Jennifer Gebetsberger; Marek Zywicki; Andrea Künzi; Norbert Polacek
Journal:  Archaea       Date:  2012-12-27       Impact factor: 3.273

9.  Hidden layers of human small RNAs.

Authors:  Hideya Kawaji; Mari Nakamura; Yukari Takahashi; Albin Sandelin; Shintaro Katayama; Shiro Fukuda; Carsten O Daub; Chikatoshi Kai; Jun Kawai; Jun Yasuda; Piero Carninci; Yoshihide Hayashizaki
Journal:  BMC Genomics       Date:  2008-04-10       Impact factor: 3.969

10.  GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes.

Authors:  Patricia P Chan; Todd M Lowe
Journal:  Nucleic Acids Res       Date:  2015-12-15       Impact factor: 16.971

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  5 in total

Review 1.  Are We Studying Non-Coding RNAs Correctly? Lessons from nc886.

Authors:  Yong Sun Lee
Journal:  Int J Mol Sci       Date:  2022-04-12       Impact factor: 6.208

2.  The infinite possibilities of RNA therapeutics.

Authors:  Evelyn C Mollocana-Lara; Ming Ni; Spiros N Agathos; Fernando A Gonzales-Zubiate
Journal:  J Ind Microbiol Biotechnol       Date:  2021-12-23       Impact factor: 4.258

3.  Ribosomal RNA fragmentation into short RNAs (rRFs) is modulated in a sex- and population of origin-specific manner.

Authors:  Tess Cherlin; Rogan Magee; Yi Jing; Venetia Pliatsika; Phillipe Loher; Isidore Rigoutsos
Journal:  BMC Biol       Date:  2020-04-13       Impact factor: 7.431

4.  The tRNA-Derived Fragment-3017A Promotes Metastasis by Inhibiting NELL2 in Human Gastric Cancer.

Authors:  Linhao Tong; Weixu Zhang; Bicheng Qu; Fei Zhang; Zhonghua Wu; Jinxin Shi; Xiaowan Chen; Yongxi Song; Zhenning Wang
Journal:  Front Oncol       Date:  2021-02-16       Impact factor: 6.244

5.  IsoMiRmap-fast, deterministic, and exhaustive mining of isomiRs from short RNA-seq datasets.

Authors:  Phillipe Loher; Nestoras Karathanasis; Eric Londin; Paul Bray; Venetia Pliatsika; Aristeidis G Telonis; Isidore Rigoutsos
Journal:  Bioinformatics       Date:  2021-01-20       Impact factor: 6.937

  5 in total

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