Literature DB >> 31320745

Mendelian disease caused by variants affecting recognition of Z-DNA and Z-RNA by the Zα domain of the double-stranded RNA editing enzyme ADAR.

Alan Herbert1.   

Abstract

Variants in the human double-stranded RNA editing enzyme ADAR produce three well-characterized rare Mendelian Diseases: Dyschromatosis Symmetrica Hereditaria (OMIM: 127400), Aicardi-Goutières syndrome (OMIM: 615010) and Bilateral Striatal Necrosis/Dystonia. ADAR encodes p150 and p110 protein isoforms. p150 incorporates the Zα domain that binds left-handed Z-DNA and Z-RNA with high affinity through contact of highly conserved residues with the DNA and RNA double helix. In certain individuals, frameshift variants on one parental chromosome in the second exon of ADAR produce haploinsufficiency of p150 while maintaining normal expression of p110. In other individuals, loss of p150 expression from one chromosome allows mapping of Zα p150 variants from the other parental chromosome directly to phenotype. The analysis reveals that loss of function Zα variants cause dysregulation of innate interferon responses to double-stranded RNA. This approach confirms a biological role for the left-handed conformation in human disease, further validating the power of Mendelian genetics to deliver unambiguous answers to difficult questions. The findings reveal that the human genome encodes genetic information using both shape and sequence.

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Year:  2019        PMID: 31320745      PMCID: PMC6906422          DOI: 10.1038/s41431-019-0458-6

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  14 in total

Review 1.  Viral Z-RNA triggers ZBP1-dependent cell death.

Authors:  Siddharth Balachandran; Edward S Mocarski
Journal:  Curr Opin Virol       Date:  2021-10-21       Impact factor: 7.090

2.  ADAR1 masks the cancer immunotherapeutic promise of ZBP1-driven necroptosis.

Authors:  Ting Zhang; Chaoran Yin; Aleksandr Fedorov; Liangjun Qiao; Hongliang Bao; Nazar Beknazarov; Shiyu Wang; Avishekh Gautam; Riley M Williams; Jeremy Chase Crawford; Suraj Peri; Vasily Studitsky; Amer A Beg; Paul G Thomas; Carl Walkley; Yan Xu; Maria Poptsova; Alan Herbert; Siddharth Balachandran
Journal:  Nature       Date:  2022-05-25       Impact factor: 69.504

Review 3.  To "Z" or not to "Z": Z-RNA, self-recognition, and the MDA5 helicase.

Authors:  Alan Herbert
Journal:  PLoS Genet       Date:  2021-05-13       Impact factor: 5.917

4.  RNA editing at a limited number of sites is sufficient to prevent MDA5 activation in the mouse brain.

Authors:  Jung In Kim; Taisuke Nakahama; Ryuichiro Yamasaki; Pedro Henrique Costa Cruz; Tuangtong Vongpipatana; Maal Inoue; Nao Kanou; Yanfang Xing; Hiroyuki Todo; Toshiharu Shibuya; Yuki Kato; Yukio Kawahara
Journal:  PLoS Genet       Date:  2021-05-13       Impact factor: 5.917

5.  Decoupling expression and editing preferences of ADAR1 p150 and p110 isoforms.

Authors:  Tony Sun; Yingpu Yu; Xianfang Wu; Ashley Acevedo; Ji-Dung Luo; Jiayi Wang; William M Schneider; Brian Hurwitz; Brad R Rosenberg; Hachung Chung; Charles M Rice
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-23       Impact factor: 12.779

6.  Recognition of non-CpG repeats in Alu and ribosomal RNAs by the Z-RNA binding domain of ADAR1 induces A-Z junctions.

Authors:  Parker J Nichols; Shaun Bevers; Morkos Henen; Jeffrey S Kieft; Quentin Vicens; Beat Vögeli
Journal:  Nat Commun       Date:  2021-02-04       Impact factor: 14.919

Review 7.  Deciphering the Biological Significance of ADAR1-Z-RNA Interactions.

Authors:  Taisuke Nakahama; Yukio Kawahara
Journal:  Int J Mol Sci       Date:  2021-10-23       Impact factor: 5.923

8.  Deep learning approach for predicting functional Z-DNA regions using omics data.

Authors:  Nazar Beknazarov; Seungmin Jin; Maria Poptsova
Journal:  Sci Rep       Date:  2020-11-05       Impact factor: 4.379

Review 9.  RNA editing in mesothelioma: a look forward.

Authors:  Ananya Hariharan; Suna Sun; Martin Wipplinger; Emanuela Felley-Bosco
Journal:  Open Biol       Date:  2020-10-14       Impact factor: 6.411

Review 10.  The Role of the Z-DNA Binding Domain in Innate Immunity and Stress Granules.

Authors:  De Chen Chiang; Yan Li; Siew Kit Ng
Journal:  Front Immunol       Date:  2021-02-03       Impact factor: 7.561

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