Literature DB >> 3131744

Codon preference reflects mistranslational constraints: a proposal.

D T McPherson1.   

Abstract

Following the observation of lysine for arginine misincorporation at the poor choice codon arg-AGA, a comparison of codon usage patterns for highly expressed mRNA's in E. coli provides a basis for the proposal that the major codon preference is subject to mistranslational constraints. In addition, the codons are utilized, as well as arranged, to provide a hydropathically conservative amino acid as the most probable replacement resulting from a mistranslational event.

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Year:  1988        PMID： 3131744      PMCID： PMC336578          DOI： 10.1093/nar/16.9.4111

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  28 in total

1.  The nucleotide sequences of the two glutamine transfer ribonucleic acids from Escherichia coli.

Authors:  M Yaniv; W R Folk
Journal:  J Biol Chem       Date:  1975-05-10       Impact factor: 5.157

2.  On the physical basis for ambiguity in genetic coding interactions.

Authors:  H J Grosjean; S de Henau; D M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  1978-02       Impact factor: 11.205

3.  On the evolution of the genetic code.

Authors:  C R Woese
Journal:  Proc Natl Acad Sci U S A       Date:  1965-12       Impact factor: 11.205

Review 4.  Compilation of tRNA sequences and sequences of tRNA genes.

Authors:  M Sprinzl; T Hartmann; F Meissner; J Moll; T Vorderwülbecke
Journal:  Nucleic Acids Res       Date:  1987       Impact factor: 16.971

5.  Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type.

Authors:  R Grantham; C Gautier; M Gouy
Journal:  Nucleic Acids Res       Date:  1980-05-10       Impact factor: 16.971

6.  Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes.

Authors:  T Ikemura
Journal:  J Mol Biol       Date:  1981-02-15       Impact factor: 5.469

7.  Studies of the complex between transfer RNAs with complementary anticodons. I. Origins of enhanced affinity between complementary triplets.

Authors:  H Grosjean; D G Söll; D M Crothers
Journal:  J Mol Biol       Date:  1976-05-25       Impact factor: 5.469

8.  Nonrandom patterns of codon usage and of nucleotide substitutions in human alpha- and beta-globin genes: an evolutionary strategy reducing the rate of mutations with drastic effects?

Authors:  G Modiano; G Battistuzzi; A G Motulsky
Journal:  Proc Natl Acad Sci U S A       Date:  1981-02       Impact factor: 11.205

9.  Codon catalog usage is a genome strategy modulated for gene expressivity.

Authors:  R Grantham; C Gautier; M Gouy; M Jacobzone; R Mercier
Journal:  Nucleic Acids Res       Date:  1981-01-10       Impact factor: 16.971

10.  Codon--anticodon pairing: the wobble hypothesis.

Authors:  F H Crick
Journal:  J Mol Biol       Date:  1966-08       Impact factor: 5.469
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  7 in total

Review 1.  Codon context.

Authors:  R H Buckingham
Journal:  Experientia       Date:  1990-12-01

2.  Nonrandom utilization of codon pairs in Escherichia coli.

Authors:  G A Gutman; G W Hatfield
Journal:  Proc Natl Acad Sci U S A       Date:  1989-05       Impact factor: 11.205

Review 3.  Codon preferences in free-living microorganisms.

Authors:  S G Andersson; C G Kurland
Journal:  Microbiol Rev       Date:  1990-06

Review 4.  Errors and alternatives in reading the universal genetic code.

Authors:  J Parker
Journal:  Microbiol Rev       Date:  1989-09

5.  Selection on codon usage for error minimization at the protein level.

Authors:  Marco Archetti
Journal:  J Mol Evol       Date:  2004-09       Impact factor: 2.395

6.  A ribosomal misincorporation of Lys for Arg in human triosephosphate isomerase expressed in Escherichia coli gives rise to two protein populations.

Authors:  Beatriz Aguirre; Miguel Costas; Nallely Cabrera; Guillermo Mendoza-Hernández; Donald L Helseth; Paulette Fernández; Marietta Tuena de Gómez-Puyou; Ruy Pérez-Montfort; Alfredo Torres-Larios; Armando Gómez Puyou
Journal:  PLoS One       Date:  2011-06-28       Impact factor: 3.240

7.  Coevolution between Stop Codon Usage and Release Factors in Bacterial Species.

Authors:  Yulong Wei; Juan Wang; Xuhua Xia
Journal:  Mol Biol Evol       Date:  2016-06-13       Impact factor: 16.240
  7 in total

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