| Literature DB >> 31310205 |
Junhang Pan, Chunfu Fang, Juying Yan, Hao Yan, Bingdong Zhan, Yi Sun, Ying Liu, Haiyan Mao, Guoping Cao, Lei Lv, Yanjun Zhang, Enfu Chen.
Abstract
We report a disease outbreak caused by chikungunya virus in Zhejiang Province, China, in August 2017. Phylogenic analysis indicated that this virus belonged to the Indian Ocean clade of the East/Central/South African genotype and was imported by a traveler returning from Bangladesh.Entities:
Keywords: China; chikungunya; chikungunya virus; outbreak; viruses
Year: 2019 PMID: 31310205 PMCID: PMC6649353 DOI: 10.3201/eid2508.181212
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
FigurePhylogenetic analysis of the complete CHIKV genome sequences of isolate ZJQZ3 from Quzhou, Zhejiang Province, China (arrow), and reference sequences. Dataset-specific models that were selected using the Akaike Information Criterion in Modeltest 3.7 (http://darwin.uvigo.es/our-software) were analyzed. Maximum-likelihood (ML) analysis was processed in RAxML v7.2.8 (http://sco.h-its.org/exelixis/software.html). The optimal ML tree and bootstrap percentages (BP) were estimated in the same run. The ML BP values were obtained from 1,000 bootstrap replicates using the rapid bootstrap algorithm. BEAST 1.6 (http://beast.community/programs) was employed to construct a Bayesian maximum clade credibility tree based on an uncorrelated exponential distributed relaxed-clock model for our sample. The genotypes of CHIKV were divided into West African, ECSA, and Asian. Virus lineages are shown at right. GenBank accession numbers are given in parentheses. Scale bar indicates nucleotide substitutions per site. CHIKV, chikungunya virus; ECSA, East/Central/South African.