Literature DB >> 23334294

Structural basis for conformational switching and GTP loading of the large G protein atlastin.

Laura J Byrnes1, Avtar Singh, Kylan Szeto, Nicole M Benvin, John P O'Donnell, Warren R Zipfel, Holger Sondermann.   

Abstract

Atlastin, a member of the dynamin superfamily, is known to catalyse homotypic membrane fusion in the smooth endoplasmic reticulum (ER). Recent studies of atlastin have elucidated key features about its structure and function; however, several mechanistic details, including the catalytic mechanism and GTP hydrolysis-driven conformational changes, are yet to be determined. Here, we present the crystal structures of atlastin-1 bound to GDP·AlF(4)(-) and GppNHp, uncovering an intramolecular arginine finger that stimulates GTP hydrolysis when correctly oriented through rearrangements within the G domain. Utilizing Förster Resonance Energy Transfer, we describe nucleotide binding and hydrolysis-driven conformational changes in atlastin and their sequence. Furthermore, we discovered a nucleotide exchange mechanism that is intrinsic to atlastin's N-terminal domains. Our results indicate that the cytoplasmic domain of atlastin acts as a tether and homotypic interactions are timed by GTP binding and hydrolysis. Perturbation of these mechanisms may be implicated in a group of atlastin-associated hereditary neurodegenerative diseases.

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Year:  2013        PMID: 23334294      PMCID: PMC3567502          DOI: 10.1038/emboj.2012.353

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  43 in total

1.  PHENIX: building new software for automated crystallographic structure determination.

Authors:  Paul D Adams; Ralf W Grosse-Kunstleve; Li Wei Hung; Thomas R Ioerger; Airlie J McCoy; Nigel W Moriarty; Randy J Read; James C Sacchettini; Nicholas K Sauter; Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

2.  Dynamin GTPase domain mutants that differentially affect GTP binding, GTP hydrolysis, and clathrin-mediated endocytosis.

Authors:  Byeong Doo Song; Marilyn Leonard; Sandra L Schmid
Journal:  J Biol Chem       Date:  2004-07-19       Impact factor: 5.157

3.  Nucleotide-dependent conformational changes in dynamin: evidence for a mechanochemical molecular spring.

Authors:  M H Stowell; B Marks; P Wigge; H T McMahon
Journal:  Nat Cell Biol       Date:  1999-05       Impact factor: 28.824

4.  Dynamin self-assembly stimulates its GTPase activity.

Authors:  D E Warnock; J E Hinshaw; S L Schmid
Journal:  J Biol Chem       Date:  1996-09-13       Impact factor: 5.157

5.  Lipid interaction of the C terminus and association of the transmembrane segments facilitate atlastin-mediated homotypic endoplasmic reticulum fusion.

Authors:  Tina Y Liu; Xin Bian; Sha Sun; Xiaoyu Hu; Robin W Klemm; William A Prinz; Tom A Rapoport; Junjie Hu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-16       Impact factor: 11.205

6.  Mutations in a newly identified GTPase gene cause autosomal dominant hereditary spastic paraplegia.

Authors:  X Zhao; D Alvarado; S Rainier; R Lemons; P Hedera; C H Weber; T Tukel; M Apak; T Heiman-Patterson; L Ming; M Bui; J K Fink
Journal:  Nat Genet       Date:  2001-11       Impact factor: 38.330

7.  Hereditary ataxias and paraplegias in Cantabria, Spain. An epidemiological and clinical study.

Authors:  J M Polo; J Calleja; O Combarros; J Berciano
Journal:  Brain       Date:  1991-04       Impact factor: 13.501

8.  Identification of residues in the human guanylate-binding protein 1 critical for nucleotide binding and cooperative GTP hydrolysis.

Authors:  Gerrit J K Praefcke; Stephan Kloep; Utz Benscheid; Hauke Lilie; Balaji Prakash; Christian Herrmann
Journal:  J Mol Biol       Date:  2004-11-12       Impact factor: 5.469

9.  Three-dimensional reconstruction of dynamin in the constricted state.

Authors:  P Zhang; J E Hinshaw
Journal:  Nat Cell Biol       Date:  2001-10       Impact factor: 28.824

10.  Prevalence of hereditary ataxias and spastic paraplegias in Molise, a region of Italy.

Authors:  A Filla; G De Michele; R Marconi; L Bucci; C Carillo; A E Castellano; L Iorio; C Kniahynicki; F Rossi; G Campanella
Journal:  J Neurol       Date:  1992-07       Impact factor: 4.849

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  40 in total

1.  A hereditary spastic paraplegia-associated atlastin variant exhibits defective allosteric coupling in the catalytic core.

Authors:  John P O'Donnell; Laura J Byrnes; Richard B Cooley; Holger Sondermann
Journal:  J Biol Chem       Date:  2017-11-27       Impact factor: 5.157

2.  The Atlastin C-terminal tail is an amphipathic helix that perturbs the bilayer structure during endoplasmic reticulum homotypic fusion.

Authors:  Joseph E Faust; Tanvi Desai; Avani Verma; Idil Ulengin; Tzu-Lin Sun; Tyler J Moss; Miguel A Betancourt-Solis; Huey W Huang; Tina Lee; James A McNew
Journal:  J Biol Chem       Date:  2015-01-02       Impact factor: 5.157

3.  Cis and trans interactions between atlastin molecules during membrane fusion.

Authors:  Tina Y Liu; Xin Bian; Fabian B Romano; Tom Shemesh; Tom A Rapoport; Junjie Hu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-30       Impact factor: 11.205

4.  The atlastin membrane anchor forms an intramembrane hairpin that does not span the phospholipid bilayer.

Authors:  Miguel A Betancourt-Solis; Tanvi Desai; James A McNew
Journal:  J Biol Chem       Date:  2018-10-04       Impact factor: 5.157

Review 5.  Mitochondrial dynamics: The dynamin superfamily and execution by collusion.

Authors:  Rajesh Ramachandran
Journal:  Semin Cell Dev Biol       Date:  2017-07-25       Impact factor: 7.727

Review 6.  The structural biology of the dynamin-related proteins: New insights into a diverse, multitalented family.

Authors:  Marijn G J Ford; Joshua S Chappie
Journal:  Traffic       Date:  2019-08-26       Impact factor: 6.215

7.  Pharmacologic rescue of axon growth defects in a human iPSC model of hereditary spastic paraplegia SPG3A.

Authors:  Peng-Peng Zhu; Kyle R Denton; Tyler Mark Pierson; Xue-Jun Li; Craig Blackstone
Journal:  Hum Mol Genet       Date:  2014-06-06       Impact factor: 6.150

8.  Phosphorylation of the C Terminus of RHD3 Has a Critical Role in Homotypic ER Membrane Fusion in Arabidopsis.

Authors:  Haruko Ueda; Etsuo Yokota; Keiko Kuwata; Natsumaro Kutsuna; Shoji Mano; Tomoo Shimada; Kentaro Tamura; Giovanni Stefano; Yoichiro Fukao; Federica Brandizzi; Teruo Shimmen; Mikio Nishimura; Ikuko Hara-Nishimura
Journal:  Plant Physiol       Date:  2015-12-18       Impact factor: 8.340

9.  EHD2 restrains dynamics of caveolae by an ATP-dependent, membrane-bound, open conformation.

Authors:  Maria Hoernke; Jagan Mohan; Elin Larsson; Jeanette Blomberg; Dana Kahra; Sebastian Westenhoff; Christian Schwieger; Richard Lundmark
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

Review 10.  Untangling the web: mechanisms underlying ER network formation.

Authors:  Uma Goyal; Craig Blackstone
Journal:  Biochim Biophys Acta       Date:  2013-04-17
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