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Literature DB >> 31296755

Mapping global protein contacts.

Sandor Vajda¹, Andrew Emili².

Abstract

Entities: Chemical Species

Mesh：

Substances：
Proteome

Year: 2019 PMID： 31296755 PMCID： PMC7299175 DOI： 10.1126/science.aay1440

Source DB: PubMed Journal: Science ISSN： 0036-8075 Impact factor: 47.728

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References

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15 in total

1. Direct-coupling analysis of residue coevolution captures native contacts across many protein families.

Authors: Faruck Morcos; Andrea Pagnani; Bryan Lunt; Arianna Bertolino; Debora S Marks; Chris Sander; Riccardo Zecchina; José N Onuchic; Terence Hwa; Martin Weigt
Journal: Proc Natl Acad Sci U S A Date: 2011-11-21 Impact factor: 11.205

2. Assessing the limits of genomic data integration for predicting protein networks.

Authors: Long J Lu; Yu Xia; Alberto Paccanaro; Haiyuan Yu; Mark Gerstein
Journal: Genome Res Date: 2005-07 Impact factor: 9.043

3. Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era.

Authors: Hetunandan Kamisetty; Sergey Ovchinnikov; David Baker
Journal: Proc Natl Acad Sci U S A Date: 2013-09-05 Impact factor: 11.205

4. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.

Authors: Yuen Ho; Albrecht Gruhler; Adrian Heilbut; Gary D Bader; Lynda Moore; Sally-Lin Adams; Anna Millar; Paul Taylor; Keiryn Bennett; Kelly Boutilier; Lingyun Yang; Cheryl Wolting; Ian Donaldson; Søren Schandorff; Juanita Shewnarane; Mai Vo; Joanne Taggart; Marilyn Goudreault; Brenda Muskat; Cris Alfarano; Danielle Dewar; Zhen Lin; Katerina Michalickova; Andrew R Willems; Holly Sassi; Peter A Nielsen; Karina J Rasmussen; Jens R Andersen; Lene E Johansen; Lykke H Hansen; Hans Jespersen; Alexandre Podtelejnikov; Eva Nielsen; Janne Crawford; Vibeke Poulsen; Birgitte D Sørensen; Jesper Matthiesen; Ronald C Hendrickson; Frank Gleeson; Tony Pawson; Michael F Moran; Daniel Durocher; Matthias Mann; Christopher W V Hogue; Daniel Figeys; Mike Tyers
Journal: Nature Date: 2002-01-10 Impact factor: 49.962

5. Learning generative models for protein fold families.

Authors: Sivaraman Balakrishnan; Hetunandan Kamisetty; Jaime G Carbonell; Su-In Lee; Christopher James Langmead
Journal: Proteins Date: 2011-01-25

6. Global landscape of cell envelope protein complexes in Escherichia coli.

Authors: Mohan Babu; Cedoljub Bundalovic-Torma; Charles Calmettes; Sadhna Phanse; Qingzhou Zhang; Yue Jiang; Zoran Minic; Sunyoung Kim; Jitender Mehla; Alla Gagarinova; Irina Rodionova; Ashwani Kumar; Hongbo Guo; Olga Kagan; Oxana Pogoutse; Hiroyuki Aoki; Viktor Deineko; J Harry Caufield; Erik Holtzapple; Zhongge Zhang; Ake Vastermark; Yogee Pandya; Christine Chieh-Lin Lai; Majida El Bakkouri; Yogesh Hooda; Megha Shah; Dan Burnside; Mohsen Hooshyar; James Vlasblom; Sessandra V Rajagopala; Ashkan Golshani; Stefan Wuchty; Jack F Greenblatt; Milton Saier; Peter Uetz; Trevor F Moraes; John Parkinson; Andrew Emili
Journal: Nat Biotechnol Date: 2017-11-27 Impact factor: 54.908

Mapping global protein contacts.

1. Direct-coupling analysis of residue coevolution captures native contacts across many protein families.

2. Assessing the limits of genomic data integration for predicting protein networks.

3. Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era.

4. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.

5. Learning generative models for protein fold families.

6. Global landscape of cell envelope protein complexes in Escherichia coli.

7. A network of protein-protein interactions in yeast.

8. An evolutionary trace method defines binding surfaces common to protein families.

9. Protein structure prediction from sequence variation.

10. Protein structure determination using metagenome sequence data.