Literature DB >> 11101803

A network of protein-protein interactions in yeast.

B Schwikowski1, P Uetz, S Fields.   

Abstract

A global analysis of 2,709 published interactions between proteins of the yeast Saccharomyces cerevisiae has been performed, enabling the establishment of a single large network of 2,358 interactions among 1,548 proteins. Proteins of known function and cellular location tend to cluster together, with 63% of the interactions occurring between proteins with a common functional assignment and 76% occurring between proteins found in the same subcellular compartment. Possible functions can be assigned to a protein based on the known functions of its interacting partners. This approach correctly predicts a functional category for 72% of the 1,393 characterized proteins with at least one partner of known function, and has been applied to predict functions for 364 previously uncharacterized proteins.

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Year:  2000        PMID: 11101803     DOI: 10.1038/82360

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  334 in total

1.  PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information.

Authors:  J Qian; B Stenger; C A Wilson; J Lin; R Jansen; S A Teichmann; J Park; W G Krebs; H Yu; V Alexandrov; N Echols; M Gerstein
Journal:  Nucleic Acids Res       Date:  2001-04-15       Impact factor: 16.971

2.  Networking proteins in yeast.

Authors:  T R Hazbun; S Fields
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-10       Impact factor: 11.205

3.  Relating whole-genome expression data with protein-protein interactions.

Authors:  Ronald Jansen; Dov Greenbaum; Mark Gerstein
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

4.  Nog2p, a putative GTPase associated with pre-60S subunits and required for late 60S maturation steps.

Authors:  C Saveanu; D Bienvenu; A Namane; P E Gleizes; N Gas; A Jacquier; M Fromont-Racine
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

5.  Genes linked by fusion events are generally of the same functional category: a systematic analysis of 30 microbial genomes.

Authors:  I Yanai; A Derti; C DeLisi
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

6.  The identification of functional modules from the genomic association of genes.

Authors:  Berend Snel; Peer Bork; Martijn A Huynen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

Review 7.  Large-scale plant proteomics.

Authors:  Birgit Kersten; Lukas Bürkle; Eckehard J Kuhn; Patrick Giavalisco; Zoltan Konthur; Angelika Lueking; Gerald Walter; Holger Eickhoff; Ulrich Schneider
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

8.  Interaction generality, a measurement to assess the reliability of a protein-protein interaction.

Authors:  Rintaro Saito; Harukazu Suzuki; Yoshihide Hayashizaki
Journal:  Nucleic Acids Res       Date:  2002-03-01       Impact factor: 16.971

9.  Protein-protein interaction panel using mouse full-length cDNAs.

Authors:  H Suzuki; Y Fukunishi; I Kagawa; R Saito; H Oda; T Endo; S Kondo; H Bono; Y Okazaki; Y Hayashizaki
Journal:  Genome Res       Date:  2001-10       Impact factor: 9.043

Review 10.  Proteomics in neuroscience: from protein to network.

Authors:  S G Grant; W P Blackstock
Journal:  J Neurosci       Date:  2001-11-01       Impact factor: 6.167

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