Literature DB >> 31291572

Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation.

Gina M Turco1, Joel Rodriguez-Medina1, Stefan Siebert2, Diane Han1, Miguel Á Valderrama-Gómez3, Hannah Vahldick1, Christine N Shulse4, Benjamin J Cole4, Celina E Juliano2, Diane E Dickel5, Michael A Savageau6, Siobhan M Brady7.   

Abstract

Plant xylem cells conduct water and mineral nutrients. Although most plant cells are totipotent, xylem cells are unusual and undergo terminal differentiation. Many genes regulating this process are well characterized, including the Vascular-related NAC Domain 7 (VND7), MYB46, and MYB83 transcription factors, which are proposed to act in interconnected feedforward loops (FFLs). Less is known regarding the molecular mechanisms underlying the terminal transition to xylem cell differentiation. Here, we generate whole-root and single-cell data, which demonstrate that VND7 initiates sharp switching of root cells to xylem cell identity. Based on these data, we identified 4 candidate VND7 downstream target genes capable of generating this switch. Although MYB46 responds to VND7 induction, it is not among these targets. This system provides an important model to study the emergent properties that may give rise to totipotency relative to terminal differentiation and reveals xylem cell subtypes.
Copyright © 2019 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  differentiation; single cell; switch; totipotent; xylem

Year:  2019        PMID: 31291572     DOI: 10.1016/j.celrep.2019.06.041

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  15 in total

1.  Quantitative imaging of RNA polymerase II activity in plants reveals the single-cell basis of tissue-wide transcriptional dynamics.

Authors:  Simon Alamos; Armando Reimer; Krishna K Niyogi; Hernan G Garcia
Journal:  Nat Plants       Date:  2021-08-09       Impact factor: 15.793

2.  Necrotic upper tips1 mimics heat and drought stress and encodes a protoxylem-specific transcription factor in maize.

Authors:  Zhaobin Dong; Zhennan Xu; Ling Xu; Mary Galli; Andrea Gallavotti; Hugo K Dooner; George Chuck
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-10       Impact factor: 11.205

Review 3.  Advances and Opportunities in Single-Cell Transcriptomics for Plant Research.

Authors:  Carolin Seyfferth; Jim Renema; Jos R Wendrich; Thomas Eekhout; Ruth Seurinck; Niels Vandamme; Bernhard Blob; Yvan Saeys; Yrjo Helariutta; Kenneth D Birnbaum; Bert De Rybel
Journal:  Annu Rev Plant Biol       Date:  2021-03-17       Impact factor: 26.379

4.  Editor profile: Siobhan M. Brady.

Authors:  Rachel Shahan
Journal:  Plant Cell       Date:  2021-05-05       Impact factor: 11.277

Review 5.  Single-cell analysis of cell identity in the Arabidopsis root apical meristem: insights and opportunities.

Authors:  Rachel Shahan; Trevor M Nolan; Philip N Benfey
Journal:  J Exp Bot       Date:  2021-10-13       Impact factor: 7.298

6.  Reconstruction of lateral root formation through single-cell RNA sequencing reveals order of tissue initiation.

Authors:  Laura Serrano-Ron; Pablo Perez-Garcia; Alvaro Sanchez-Corrionero; Inmaculada Gude; Javier Cabrera; Pui-Leng Ip; Kenneth D Birnbaum; Miguel A Moreno-Risueno
Journal:  Mol Plant       Date:  2021-05-29       Impact factor: 21.949

7.  Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root.

Authors:  Tian-Qi Zhang; Yu Chen; Ye Liu; Wen-Hui Lin; Jia-Wei Wang
Journal:  Nat Commun       Date:  2021-04-06       Impact factor: 14.919

8.  Shoot and root single cell sequencing reveals tissue- and daytime-specific transcriptome profiles.

Authors:  Federico Apelt; Eleni Mavrothalassiti; Saurabh Gupta; Frank Machin; Justyna Jadwiga Olas; Maria Grazia Annunziata; Dana Schindelasch; Friedrich Kragler
Journal:  Plant Physiol       Date:  2022-02-04       Impact factor: 8.340

Review 9.  A Sight on Single-Cell Transcriptomics in Plants Through the Prism of Cell-Based Computational Modeling Approaches: Benefits and Challenges for Data Analysis.

Authors:  Aleksandr Bobrovskikh; Alexey Doroshkov; Stefano Mazzoleni; Fabrizio Cartenì; Francesco Giannino; Ulyana Zubairova
Journal:  Front Genet       Date:  2021-05-21       Impact factor: 4.599

Review 10.  Plant single-cell solutions for energy and the environment.

Authors:  Benjamin Cole; Dominique Bergmann; Crysten E Blaby-Haas; Ian K Blaby; Kristofer E Bouchard; Siobhan M Brady; Doina Ciobanu; Devin Coleman-Derr; Samuel Leiboff; Jenny C Mortimer; Tatsuya Nobori; Seung Y Rhee; Jeremy Schmutz; Blake A Simmons; Anup K Singh; Neelima Sinha; John P Vogel; Ronan C O'Malley; Axel Visel; Diane E Dickel
Journal:  Commun Biol       Date:  2021-08-12
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