| Literature DB >> 31289104 |
Yusuke Kawamura1,2, Hirofumi Nakaoka3, Akiyoshi Nakayama1,4, Yukinori Okada5,6,7, Ken Yamamoto8, Toshihide Higashino1, Masayuki Sakiyama1,9, Toru Shimizu10,11, Hiroshi Ooyama12, Keiko Ooyama12, Mitsuo Nagase13, Yuji Hidaka14, Yuko Shirahama8, Kazuyoshi Hosomichi15, Yuichiro Nishida16, Ippei Shimoshikiryo17, Asahi Hishida18, Sakurako Katsuura-Kamano19, Seiko Shimizu1, Makoto Kawaguchi1,20, Hirokazu Uemura19, Rie Ibusuki17, Megumi Hara16, Mariko Naito18,21, Mikiya Takao1,22, Mayuko Nakajima1, Satoko Iwasawa23, Hiroshi Nakashima23, Keizo Ohnaka24, Takahiro Nakamura25, Blanka Stiburkova26,27, Tony R Merriman28, Masahiro Nakatochi29, Sahoko Ichihara30, Mitsuhiro Yokota31, Tappei Takada32, Tatsuya Saitoh33,34, Yoichiro Kamatani6,35, Atsushi Takahashi6,36, Kokichi Arisawa19, Toshiro Takezaki17, Keitaro Tanaka16, Kenji Wakai18, Michiaki Kubo37, Tatsuo Hosoya38,39, Kimiyoshi Ichida38,40, Ituro Inoue3, Nariyoshi Shinomiya1, Hirotaka Matsuo41.
Abstract
OBJECTIVE: The first ever genome-wide association study (GWAS) of clinically defined gout cases and asymptomatic hyperuricaemia (AHUA) controls was performed to identify novel gout loci that aggravate AHUA into gout.Entities:
Keywords: asymptomatic hyperuricemia; genome-wide association study; gout; individually-tailored preemptive medicine; uric acid
Mesh:
Substances:
Year: 2019 PMID: 31289104 PMCID: PMC6788923 DOI: 10.1136/annrheumdis-2019-215521
Source DB: PubMed Journal: Ann Rheum Dis ISSN: 0003-4967 Impact factor: 19.103
Figure 1Two steps in the development of gout. We performed, for the first time, a GWAS using clinically defined gout cases and AHUA controls to identify gout loci that influence the progression from hyperuricaemia to gout (the second step). Previous GWASs on gout were performed with gout cases and normouricaemics of which both SUA elevation (the first step) and the second step consisted; however, most of their identified loci were associated with the first step. Because only a proportion of AHUA individuals are known to develop gout, we hypothesised that the genetic effects at the second step would play important roles in crystal-induced inflammation as gout attack. AHUA, asymptomatic hyperuricaemia; GWAS, genome-wide association study; SUA, serum uric acid.
Figure 2Study design of GWAS of gout cases and asymptomatic hyperuricaemia controls. We performed a GWAS followed by two replication studies (REP1 and REP2 stages) with 2860 Japanese male gout cases and 3149 AHUA controls. Meta-analysis identified two novel loci (CNTN5 and MIR302F) and a suggestive locus (ZNF724) at the genome-wide significance level. AHUA, asymptomatic hyperuricaemia; GWAS, genome-wide association study; REP1, the first replication; REP2, the second replication.
Five SNPs showing significant association at the genome-wide significance level and one suggestive SNP
| Allele* | GWAS stage‡ | REP1 stage§ | REP2 stage¶ | Meta-analysis** | ||||||||||||||||||
| Risk allele frequency | Risk allele frequency | Risk allele frequency | Fixed-effect model | Random-effect model | Cochran's Q | |||||||||||||||||
| SNP | A/B | Chr | Position† | Gene | Case | Control | OR (95% CI) | P value | Case | Control | OR (95% CI) | P value | Case | Control | OR (95% CI) | P value | OR (95% CI) | P value | OR (95% CI) | P value | P value |
|
| rs2728125 | G/A | 4 | 89 001 893 |
| 0.401 | 0.304 | 1.54 (1.35 to 1.76) | 1.76×10−10 | 0.400 | 0.313 | 1.46 (1.31 to 1.64) | 5.33×10−11 | NA | NA | NA | NA | 1.49 (1.37 to 1.63) | 6.58×10−20 | 1.49 (1.37 to 1.63) | 6.58×10−20 | 0.57 | 0 |
| rs671 | C/T | 12 | 112 241 766 |
| 0.821 | 0.751 | 1.52 (1.30 to 1.77) | 1.33×10−7 | 0.821 | 0.760 | 1.44 (1.26 to 1.65) | 5.94×10−8 | NA | NA | NA | NA | 1.47 (1.33 to 1.63) | 4.44×10−14 | 1.47 (1.33 to 1.63) | 4.44×10−14 | 0.62 | 0 |
| rs1014290 | T/C | 4 | 10 001 861 |
| 0.678 | 0.623 | 1.28 (1.12 to 1.46) | 2.75×10−4 | 0.674 | 0.611 | 1.31 (1.17 to 1.47) | 2.03×10−6 | NA | NA | NA | NA | 1.30 (1.19 to1.41) | 2.29×10−9 | 1.30 (1.19 to 1.41) | 2.29×10−9 | 0.76 | 0 |
| rs7927466 | A/G | 11 | 100 141 763 |
| 0.976 | 0.953 | 1.99 (1.39 to 2.85) | 1.59×10−4 | 0.973 | 0.954 | 1.74 (1.30 to 2.33) | 2.29×10−4 | 0.976 | 0.954 | 1.91 (1.16 to 3.12) | 1.03×10−2 | 1.85 (1.50 to 2.27) | 5.33×10−9 | 1.85 (1.50 to 2.27) | 5.33×10−9 | 0.84 | 0 |
| rs9952962 | C/T | 18 | 27 535 568 |
| 0.549 | 0.486 | 1.29 (1.14 to 1.46) | 8.07×10−5 | 0.547 | 0.506 | 1.18 (1.06 to 1.31) | 2.97×10−3 | 0.552 | 0.490 | 1.28 (1.09 to 1.51) | 2.92×10−3 | 1.24 (1.15 to 1.33) | 1.67×10−8 | 1.24 (1.15 to 1.33) | 1.67×10−8 | 0.50 | 0 |
| rs12980365 | A/G | 19 | 23 395 317 |
| 0.976 | 0.957 | 1.84 (1.27 to 2.65) | 1.12×10−3 | 0.974 | 0.959 | 1.61 (1.19 to 2.18) | 1.97×10−3 | 0.975 | 0.948 | 2.09 (1.29 to 3.36) | 2.58×10−3 | 1.77 (1.43 to 2.18) | 9.76×10−8 | 1.77 (1.43 to 2.18) | 9.76×10−8 | 0.65 | 0 |
*Allele A is risk-associated allele, and allele B is non-risk-associated allele.
†SNP positions are based on NCBI human genome reference sequence Build 37.4.
‡945 gout cases and 1003 AHUA controls.
§1499 gout cases and 1186 AHUA controls.
¶416 gout cases and 960 AHUA controls.
**Meta-analyses of the combined GWAS and replication samples (2860 gout cases and 3149 controls of Japanese men).
AHUA, asymptomatic hyperuricaemia; Chr, Chromosome; GWAS, genome-wide association study;NCBI, National Center for Biotechnology Information; REP1, the first replication; REP2, the second replication;SNP, single nucleotide polymorphism.
Figure 5Comparison ORs for three gout loci by the present GWAS (gout vs AHUA) with ORs for 10 gout loci by the previous GWAS (gout vs normouricaemia). Dots represent ORs and lines represent 95% CIs. The horizontal axis shows ORs for gout compared with normouricaemia, and the vertical axis shows ORs for gout compared with AHUA, whereas 10 ’normouricaemia to gout’ loci are located under the oblique line, three novel ‘AHUA to gout’ loci are above it. AHUA, asymptomatic hyperuricaemia; GWAS, genome-wide association study.