Literature DB >> 31288986

Computational and Systems Immunology: A Student's Perspective.

Zinaida Good1, Jacob Glanville2, Marvin H Gee3, Mark M Davis4, Purvesh Khatri5.   

Abstract

The big data revolution has transformed the landscape of immunology research. As inaugural students of Stanford's new Computational and Systems Immunology PhD track, we share our experiences and advice with other institutions considering a similar program.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Mesh：

Year:  2019        PMID： 31288986      PMCID： PMC7035103          DOI： 10.1016/j.it.2019.06.006

Source DB:  PubMed          Journal:  Trends Immunol        ISSN： 1471-4906            Impact factor:   16.687


  15 in total

1.  Teaching 'big data' analysis to young immunologists.

Authors:  Joachim L Schultze
Journal:  Nat Immunol       Date:  2015-09       Impact factor: 25.606

Review 2.  Systems immunology: just getting started.

Authors:  Mark M Davis; Cristina M Tato; David Furman
Journal:  Nat Immunol       Date:  2017-06-20       Impact factor: 25.606

3.  Linking T-cell receptor sequence to functional phenotype at the single-cell level.

Authors:  Arnold Han; Jacob Glanville; Leo Hansmann; Mark M Davis
Journal:  Nat Biotechnol       Date:  2014-06-22       Impact factor: 54.908

4.  Stress-testing the relationship between T cell receptor/peptide-MHC affinity and cross-reactivity using peptide velcro.

Authors:  Marvin H Gee; Leah V Sibener; Michael E Birnbaum; Kevin M Jude; Xinbo Yang; Ricardo A Fernandes; Juan L Mendoza; Caleb R Glassman; K Christopher Garcia
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-18       Impact factor: 11.205

5.  Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.

Authors:  Geoffrey Schiebinger; Jian Shu; Marcin Tabaka; Brian Cleary; Vidya Subramanian; Aryeh Solomon; Joshua Gould; Siyan Liu; Stacie Lin; Peter Berube; Lia Lee; Jenny Chen; Justin Brumbaugh; Philippe Rigollet; Konrad Hochedlinger; Rudolf Jaenisch; Aviv Regev; Eric S Lander
Journal:  Cell       Date:  2019-01-31       Impact factor: 41.582

6.  Single-cell developmental classification of B cell precursor acute lymphoblastic leukemia at diagnosis reveals predictors of relapse.

Authors:  Zinaida Good; Jolanda Sarno; Astraea Jager; Nikolay Samusik; Nima Aghaeepour; Erin F Simonds; Leah White; Norman J Lacayo; Wendy J Fantl; Grazia Fazio; Giuseppe Gaipa; Andrea Biondi; Robert Tibshirani; Sean C Bendall; Garry P Nolan; Kara L Davis
Journal:  Nat Med       Date:  2018-03-05       Impact factor: 53.440

Review 7.  Training the 21st Century Immunologist.

Authors:  Roberto Spreafico; Simon Mitchell; Alexander Hoffmann
Journal:  Trends Immunol       Date:  2015-04-21       Impact factor: 16.687

8.  Optimization and Control of Agent-Based Models in Biology: A Perspective.

Authors:  G An; B G Fitzpatrick; S Christley; P Federico; A Kanarek; R Miller Neilan; M Oremland; R Salinas; R Laubenbacher; S Lenhart
Journal:  Bull Math Biol       Date:  2016-11-08       Impact factor: 1.758

9.  Increased monocyte count as a cellular biomarker for poor outcomes in fibrotic diseases: a retrospective, multicentre cohort study.

Authors:  Madeleine K D Scott; Katie Quinn; Qin Li; Robert Carroll; Hayley Warsinske; Francesco Vallania; Shirley Chen; Mary A Carns; Kathleen Aren; Jiehuan Sun; Kimberly Koloms; Jungwha Lee; Jessika Baral; Jonathan Kropski; Hongyu Zhao; Erica Herzog; Fernando J Martinez; Bethany B Moore; Monique Hinchcliff; Joshua Denny; Naftali Kaminski; Jose D Herazo-Maya; Nigam H Shah; Purvesh Khatri
Journal:  Lancet Respir Med       Date:  2019-03-29       Impact factor: 102.642

10.  Proliferation tracing with single-cell mass cytometry optimizes generation of stem cell memory-like T cells.

Authors:  Zinaida Good; Luciene Borges; Nora Vivanco Gonzalez; Bita Sahaf; Nikolay Samusik; Robert Tibshirani; Garry P Nolan; Sean C Bendall
Journal:  Nat Biotechnol       Date:  2019-02-11       Impact factor: 54.908
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