Literature DB >> 26287590

Teaching 'big data' analysis to young immunologists.

Joachim L Schultze1.   

Abstract

Mesh：

Year:  2015        PMID： 26287590     DOI： 10.1038/ni.3250

Source DB:  PubMed          Journal:  Nat Immunol        ISSN： 1529-2908            Impact factor:   25.606


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  19 in total

Review 1.  Each cell counts: Hematopoiesis and immunity research in the era of single cell genomics.

Authors:  Diego Adhemar Jaitin; Hadas Keren-Shaul; Naama Elefant; Ido Amit
Journal:  Semin Immunol       Date:  2015-02-26       Impact factor: 11.130

2.  Preparing to work with big data in proteomics - a report on the HUPO-PSI Spring Workshop: April 15-17, 2013, Liverpool, UK.

Authors:  Sandra Orchard; Pierre-Alain Binz; Andrew R Jones; Juan Antonio Vizcaino; Eric W Deutsch; Henning Hermjakob
Journal:  Proteomics       Date:  2013-10       Impact factor: 3.984

3.  Drilling into big cancer-genome data.

Authors:  Vivien Marx
Journal:  Nat Methods       Date:  2013-04       Impact factor: 28.547

4.  The promised land of human immunology.

Authors:  Laura F Su; Arnold Han; Helen M McGuire; David Furman; Evan W Newell; Mark M Davis
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2014-03-17

Review 5.  The big data challenges of connectomics.

Authors:  Jeff W Lichtman; Hanspeter Pfister; Nir Shavit
Journal:  Nat Neurosci       Date:  2014-10-28       Impact factor: 24.884

6.  Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.

Authors:  Diego Adhemar Jaitin; Ephraim Kenigsberg; Hadas Keren-Shaul; Naama Elefant; Franziska Paul; Irina Zaretsky; Alexander Mildner; Nadav Cohen; Steffen Jung; Amos Tanay; Ido Amit
Journal:  Science       Date:  2014-02-14       Impact factor: 47.728

7.  Innate immune activity conditions the effect of regulatory variants upon monocyte gene expression.

Authors:  Peter Humburg; Seiko Makino; Benjamin P Fairfax; Vivek Naranbhai; Daniel Wong; Evelyn Lau; Luke Jostins; Katharine Plant; Robert Andrews; Chris McGee; Julian C Knight
Journal:  Science       Date:  2014-03-07       Impact factor: 47.728

8.  An epigenome-wide association study of total serum immunoglobulin E concentration.

Authors:  Saffron A G Willis-Owen; Catherine Laprise; Liming Liang; Kenny C C Wong; Gwyneth A Davies; Thomas J Hudson; Aristea Binia; Julian M Hopkin; Ivana V Yang; Elin Grundberg; Stephan Busche; Marie Hudson; Lars Rönnblom; Tomi M Pastinen; David A Schwartz; G Mark Lathrop; Miriam F Moffatt; William O C M Cookson
Journal:  Nature       Date:  2015-02-18       Impact factor: 49.962

9.  High-density lipoprotein mediates anti-inflammatory reprogramming of macrophages via the transcriptional regulator ATF3.

Authors:  Dominic De Nardo; Larisa I Labzin; Hajime Kono; Reiko Seki; Susanne V Schmidt; Marc Beyer; Dakang Xu; Sebastian Zimmer; Catharina Lahrmann; Frank A Schildberg; Johanna Vogelhuber; Michael Kraut; Thomas Ulas; Anja Kerksiek; Wolfgang Krebs; Niklas Bode; Alena Grebe; Michael L Fitzgerald; Nicholas J Hernandez; Bryan R G Williams; Percy Knolle; Manfred Kneilling; Martin Röcken; Dieter Lütjohann; Samuel D Wright; Joachim L Schultze; Eicke Latz
Journal:  Nat Immunol       Date:  2013-12-08       Impact factor: 25.606

10.  Transcriptome-based network analysis reveals a spectrum model of human macrophage activation.

Authors:  Jia Xue; Susanne V Schmidt; Jil Sander; Astrid Draffehn; Wolfgang Krebs; Inga Quester; Dominic De Nardo; Trupti D Gohel; Martina Emde; Lisa Schmidleithner; Hariharasudan Ganesan; Andrea Nino-Castro; Michael R Mallmann; Larisa Labzin; Heidi Theis; Michael Kraut; Marc Beyer; Eicke Latz; Tom C Freeman; Thomas Ulas; Joachim L Schultze
Journal:  Immunity       Date:  2014-02-13       Impact factor: 31.745
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  5 in total

1.  Computational and Systems Immunology: A Student's Perspective.

Authors:  Zinaida Good; Jacob Glanville; Marvin H Gee; Mark M Davis; Purvesh Khatri
Journal:  Trends Immunol       Date:  2019-07-06       Impact factor: 16.687

2.  A practical guide to mechanistic systems modeling in biology using a logic-based approach.

Authors:  Anna Niarakis; Tomáš Helikar
Journal:  Brief Bioinform       Date:  2021-07-20       Impact factor: 11.622

Review 3.  A guide to systems-level immunomics.

Authors:  Lorenzo Bonaguro; Jonas Schulte-Schrepping; Thomas Ulas; Anna C Aschenbrenner; Marc Beyer; Joachim L Schultze
Journal:  Nat Immunol       Date:  2022-09-22       Impact factor: 31.250

Review 4.  Analysis of Major Histocompatibility Complex (MHC) Immunopeptidomes Using Mass Spectrometry.

Authors:  Etienne Caron; Daniel J Kowalewski; Ching Chiek Koh; Theo Sturm; Heiko Schuster; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2015-12       Impact factor: 5.911

5.  Unsupervised machine learning reveals key immune cell subsets in COVID-19, rhinovirus infection, and cancer therapy.

Authors:  Sierra M Barone; Alberta Ga Paul; Lyndsey M Muehling; Joanne A Lannigan; William W Kwok; Ronald B Turner; Judith A Woodfolk; Jonathan M Irish
Journal:  Elife       Date:  2021-08-05       Impact factor: 8.713
  5 in total

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