Literature DB >> 31283201

Mo-, V-, and Fe-Nitrogenases Use a Universal Eight-Electron Reductive-Elimination Mechanism To Achieve N2 Reduction.

Derek F Harris1, Dmitriy A Lukoyanov2, Hayden Kallas1, Christian Trncik3, Zhi-Yong Yang1, Phil Compton2, Neil Kelleher2, Oliver Einsle3, Dennis R Dean4, Brian M Hoffman2, Lance C Seefeldt1.   

Abstract

Three genetically distinct, but structurally similar, isozymes of nitrogenase catalyze biological N2 reduction to 2NH3: Mo-, V-, and Fe-nitrogenase, named respectively for the metal (M) in their active site metallocofactors (metal-ion composition, MFe7). Studies of the Mo-enzyme have revealed key aspects of its mechanism for N2 binding and reduction. Central to this mechanism is accumulation of four electrons and protons on its active site metallocofactor, called FeMo-co, as metal bound hydrides to generate the key E4(4H) ("Janus") state. N2 binding/reduction in this state is coupled to reductive elimination (re) of the two hydrides as H2, the forward direction of a reductive-elimination/oxidative-addition (re/oa) equilibrium. A recent study demonstrated that Fe-nitrogenase follows the same re/oa mechanism, as particularly evidenced by HD formation during turnover under N2/D2. Kinetic analysis revealed that Mo- and Fe-nitrogenases show similar rate constants for hydrogenase-like H2 formation by hydride protonolysis (kHP) but significant differences in the rate constant for H2 re with N2 binding/reduction (kre). We now report that V-nitrogenase also exhibits HD formation during N2/D2 turnover (and H2 inhibition of N2 reduction), thereby establishing the re/oa equilibrium as a universal mechanism for N2 binding and activation among the three nitrogenases. Kinetic analysis further reveals that differences in catalytic efficiencies do not stem from significant differences in the rate constant (kHP) for H2 production by the hydrogenase-like side reaction but directly arise from the differences in the rate constant (kre) for the re of H2 coupled to N2 binding/reduction, which decreases in the order Mo > V > Fe.

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Year:  2019        PMID: 31283201     DOI: 10.1021/acs.biochem.9b00468

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  20 in total

Review 1.  Catalytic N2-to-NH3 (or -N2H4) Conversion by Well-Defined Molecular Coordination Complexes.

Authors:  Matthew J Chalkley; Marcus W Drover; Jonas C Peters
Journal:  Chem Rev       Date:  2020-04-30       Impact factor: 60.622

Review 2.  Reduction of Substrates by Nitrogenases.

Authors:  Lance C Seefeldt; Zhi-Yong Yang; Dmitriy A Lukoyanov; Derek F Harris; Dennis R Dean; Simone Raugei; Brian M Hoffman
Journal:  Chem Rev       Date:  2020-03-16       Impact factor: 60.622

Review 3.  Reactivity, Mechanism, and Assembly of the Alternative Nitrogenases.

Authors:  Andrew J Jasniewski; Chi Chung Lee; Markus W Ribbe; Yilin Hu
Journal:  Chem Rev       Date:  2020-03-04       Impact factor: 60.622

Review 4.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

5.  Interactions between paralogous bacterial enhancer-binding proteins enable metal-dependent regulation of alternative nitrogenases in Azotobacter vinelandii.

Authors:  Corinne Appia-Ayme; Richard Little; Govind Chandra; Carlo de Oliveira Martins; Marcelo Bueno Batista; Ray Dixon
Journal:  Mol Microbiol       Date:  2022-06-29       Impact factor: 3.979

6.  Tungsten Enzyme Using Hydrogen as an Electron Donor to Reduce Carboxylic Acids and NAD.

Authors:  Agnieszka Winiarska; Dominik Hege; Yvonne Gemmecker; Joanna Kryściak-Czerwenka; Andreas Seubert; Johann Heider; Maciej Szaleniec
Journal:  ACS Catal       Date:  2022-07-06       Impact factor: 13.700

Review 7.  The Spectroscopy of Nitrogenases.

Authors:  Casey Van Stappen; Laure Decamps; George E Cutsail; Ragnar Bjornsson; Justin T Henthorn; James A Birrell; Serena DeBeer
Journal:  Chem Rev       Date:  2020-04-02       Impact factor: 60.622

8.  Expression, Isolation, and Characterization of Vanadium Nitrogenase from Azotobacter vinelandii.

Authors:  Katharina Parison; Jakob Gies-Elterlein; Christian Trncik; Oliver Einsle
Journal:  Methods Mol Biol       Date:  2021

9.  Carbon substrate re-orders relative growth of a bacterium using Mo-, V-, or Fe-nitrogenase for nitrogen fixation.

Authors:  Katja E Luxem; Anne M L Kraepiel; Lichun Zhang; Jacob R Waldbauer; Xinning Zhang
Journal:  Environ Microbiol       Date:  2020-02-29       Impact factor: 5.491

10.  Two ligand-binding sites in CO-reducing V nitrogenase reveal a general mechanistic principle.

Authors:  Michael Rohde; Konstantin Laun; Ingo Zebger; Sven T Stripp; Oliver Einsle
Journal:  Sci Adv       Date:  2021-05-28       Impact factor: 14.136

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