Literature DB >> 31278301

Uncovering the signaling landscape controlling breast cancer cell migration identifies novel metastasis driver genes.

Esmee Koedoot1, Michiel Fokkelman1, Vasiliki-Maria Rogkoti1, Marcel Smid2, Iris van de Sandt1, Hans de Bont1, Chantal Pont1, Janna E Klip1, Steven Wink1, Mieke A Timmermans2, Erik A C Wiemer2, Peter Stoilov3, John A Foekens2, Sylvia E Le Dévédec1, John W M Martens2, Bob van de Water4.   

Abstract

Ttriple-negative breast cancer (TNBC) is an aggressive and highly metastatic breast cancer subtype. Enhanced TNBC cell motility is a prerequisite of TNBC cell dissemination. Here, we apply an imaging-based RNAi phenotypic cell migration screen using two highly motile TNBC cell lines (Hs578T and MDA-MB-231) to provide a repository of signaling determinants that functionally drive TNBC cell motility. We have screened ~4,200 target genes individually and discovered 133 and 113 migratory modulators of Hs578T and MDA-MB-231, respectively, which are linked to signaling networks predictive for breast cancer progression. The splicing factors PRPF4B and BUD31 and the transcription factor BPTF are essential for cancer cell migration, amplified in human primary breast tumors and associated with metastasis-free survival. Depletion of PRPF4B, BUD31 and BPTF causes primarily down regulation of genes involved in focal adhesion and ECM-interaction pathways. PRPF4B is essential for TNBC metastasis formation in vivo, making PRPF4B a candidate for further drug development.

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Year:  2019        PMID: 31278301      PMCID: PMC6611796          DOI: 10.1038/s41467-019-11020-3

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  66 in total

1.  Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series.

Authors:  Christine Desmedt; Fanny Piette; Sherene Loi; Yixin Wang; Françoise Lallemand; Benjamin Haibe-Kains; Giuseppe Viale; Mauro Delorenzi; Yi Zhang; Mahasti Saghatchian d'Assignies; Jonas Bergh; Rosette Lidereau; Paul Ellis; Adrian L Harris; Jan G M Klijn; John A Foekens; Fatima Cardoso; Martine J Piccart; Marc Buyse; Christos Sotiriou
Journal:  Clin Cancer Res       Date:  2007-06-01       Impact factor: 12.531

2.  Identification of genes that regulate epithelial cell migration using an siRNA screening approach.

Authors:  Kaylene J Simpson; Laura M Selfors; James Bui; Angela Reynolds; Devin Leake; Anastasia Khvorova; Joan S Brugge
Journal:  Nat Cell Biol       Date:  2008-09       Impact factor: 28.824

3.  Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis.

Authors:  Christos Sotiriou; Pratyaksha Wirapati; Sherene Loi; Adrian Harris; Steve Fox; Johanna Smeds; Hans Nordgren; Pierre Farmer; Viviane Praz; Benjamin Haibe-Kains; Christine Desmedt; Denis Larsimont; Fatima Cardoso; Hans Peterse; Dimitry Nuyten; Marc Buyse; Marc J Van de Vijver; Jonas Bergh; Martine Piccart; Mauro Delorenzi
Journal:  J Natl Cancer Inst       Date:  2006-02-15       Impact factor: 13.506

4.  Lung metastasis genes couple breast tumor size and metastatic spread.

Authors:  Andy J Minn; Gaorav P Gupta; David Padua; Paula Bos; Don X Nguyen; Dimitry Nuyten; Bas Kreike; Yi Zhang; Yixin Wang; Hemant Ishwaran; John A Foekens; Marc van de Vijver; Joan Massagué
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-09       Impact factor: 11.205

5.  A genome-wide siRNA screen identifies proteasome addiction as a vulnerability of basal-like triple-negative breast cancer cells.

Authors:  Fabio Petrocca; Gabriel Altschuler; Shen Mynn Tan; Marc L Mendillo; Haoheng Yan; D Joseph Jerry; Andrew L Kung; Winston Hide; Tan A Ince; Judy Lieberman
Journal:  Cancer Cell       Date:  2013-08-12       Impact factor: 31.743

6.  The landscape of cancer genes and mutational processes in breast cancer.

Authors:  Philip J Stephens; Patrick S Tarpey; Helen Davies; Peter Van Loo; Chris Greenman; David C Wedge; Serena Nik-Zainal; Sancha Martin; Ignacio Varela; Graham R Bignell; Lucy R Yates; Elli Papaemmanuil; David Beare; Adam Butler; Angela Cheverton; John Gamble; Jonathan Hinton; Mingming Jia; Alagu Jayakumar; David Jones; Calli Latimer; King Wai Lau; Stuart McLaren; David J McBride; Andrew Menzies; Laura Mudie; Keiran Raine; Roland Rad; Michael Spencer Chapman; Jon Teague; Douglas Easton; Anita Langerød; Ming Ta Michael Lee; Chen-Yang Shen; Benita Tan Kiat Tee; Bernice Wong Huimin; Annegien Broeks; Ana Cristina Vargas; Gulisa Turashvili; John Martens; Aquila Fatima; Penelope Miron; Suet-Feung Chin; Gilles Thomas; Sandrine Boyault; Odette Mariani; Sunil R Lakhani; Marc van de Vijver; Laura van 't Veer; John Foekens; Christine Desmedt; Christos Sotiriou; Andrew Tutt; Carlos Caldas; Jorge S Reis-Filho; Samuel A J R Aparicio; Anne Vincent Salomon; Anne-Lise Børresen-Dale; Andrea L Richardson; Peter J Campbell; P Andrew Futreal; Michael R Stratton
Journal:  Nature       Date:  2012-05-16       Impact factor: 49.962

7.  Smurf1 regulates tumor cell plasticity and motility through degradation of RhoA leading to localized inhibition of contractility.

Authors:  Erik Sahai; Raquel Garcia-Medina; Jacques Pouysségur; Emmanuel Vial
Journal:  J Cell Biol       Date:  2006-12-26       Impact factor: 10.539

8.  Comparative proteome analysis revealing an 11-protein signature for aggressive triple-negative breast cancer.

Authors:  Ning Qing Liu; Christoph Stingl; Maxime P Look; Marcel Smid; René B H Braakman; Tommaso De Marchi; Anieta M Sieuwerts; Paul N Span; Fred C G J Sweep; Barbro K Linderholm; Anita Mangia; Angelo Paradiso; Luc Y Dirix; Steven J Van Laere; Theo M Luider; John W M Martens; John A Foekens; Arzu Umar
Journal:  J Natl Cancer Inst       Date:  2014-01-07       Impact factor: 13.506

9.  ConsensusPathDB--a database for integrating human functional interaction networks.

Authors:  Atanas Kamburov; Christoph Wierling; Hans Lehrach; Ralf Herwig
Journal:  Nucleic Acids Res       Date:  2008-10-21       Impact factor: 16.971

Review 10.  The Cancer Spliceome: Reprograming of Alternative Splicing in Cancer.

Authors:  Ettaib El Marabti; Ihab Younis
Journal:  Front Mol Biosci       Date:  2018-09-07
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  25 in total

Review 1.  Splicing Busts a Move: Isoform Switching Regulates Migration.

Authors:  Mithun Mitra; Ha Neul Lee; Hilary A Coller
Journal:  Trends Cell Biol       Date:  2019-12-03       Impact factor: 20.808

2.  Splicing factor BUD31 promotes ovarian cancer progression through sustaining the expression of anti-apoptotic BCL2L12.

Authors:  Zixiang Wang; Shourong Wang; Junchao Qin; Xiyu Zhang; Gang Lu; Hongbin Liu; Haiyang Guo; Ligang Wu; Victoria O Shender; Changshun Shao; Beihua Kong; Zhaojian Liu
Journal:  Nat Commun       Date:  2022-10-21       Impact factor: 17.694

Review 3.  Deciphering molecular mechanisms of metastasis: novel insights into targets and therapeutics.

Authors:  Bikashita Kalita; Mohane Selvaraj Coumar
Journal:  Cell Oncol (Dordr)       Date:  2021-04-29       Impact factor: 6.730

4.  Phenotypic Heterogeneity and Metastasis of Breast Cancer Cells.

Authors:  Lauren A Hapach; Shawn P Carey; Samantha C Schwager; Paul V Taufalele; Wenjun Wang; Jenna A Mosier; Nerymar Ortiz-Otero; Tanner J McArdle; Zachary E Goldblatt; Marsha C Lampi; Francois Bordeleau; Jocelyn R Marshall; Isaac M Richardson; Jiahe Li; Michael R King; Cynthia A Reinhart-King
Journal:  Cancer Res       Date:  2021-05-11       Impact factor: 13.312

5.  Haploinsufficient tumor suppressor PRP4K is negatively regulated during epithelial-to-mesenchymal transition.

Authors:  Livia E Clarke; Allyson Cook; Sabateeshan Mathavarajah; Amit Bera; Jayme Salsman; Elias Habib; Carter Van Iderstine; Moamen Bydoun; Stephen M Lewis; Graham Dellaire
Journal:  FASEB J       Date:  2021-11       Impact factor: 5.834

6.  Wide-ranging analysis of survival-related alternative splicing events in invasive breast carcinoma.

Authors:  Keren Jia; Yingcheng Wu; Jing Huang; Jianing Chen; Huagen Wei; Huiqun Wu
Journal:  Oncol Lett       Date:  2020-06-05       Impact factor: 2.967

7.  Targeting Pyruvate Kinase M2 Phosphorylation Reverses Aggressive Cancer Phenotypes.

Authors:  Maria Apostolidi; Ioannis A Vathiotis; Viswanathan Muthusamy; Patricia Gaule; Brandon M Gassaway; David L Rimm; Jesse Rinehart
Journal:  Cancer Res       Date:  2021-06-21       Impact factor: 12.701

8.  3D tumor spheroid microarray for high-throughput, high-content natural killer cell-mediated cytotoxicity.

Authors:  Sneha Gopal; Seok-Joon Kwon; Bosung Ku; Dong Woo Lee; Jungeun Kim; Jonathan S Dordick
Journal:  Commun Biol       Date:  2021-07-21

Review 9.  The molecular basis of mammary gland development and epithelial differentiation.

Authors:  Priscila Ferreira Slepicka; Amritha Varshini Hanasoge Somasundara; Camila O Dos Santos
Journal:  Semin Cell Dev Biol       Date:  2020-10-17       Impact factor: 7.499

Review 10.  Molecular Structure, Binding Affinity, and Biological Activity in the Epigenome.

Authors:  Balázs Zoltán Zsidó; Csaba Hetényi
Journal:  Int J Mol Sci       Date:  2020-06-10       Impact factor: 5.923

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