| Literature DB >> 31271059 |
Leonie-Sophie Hecht1, Angeles Jurado-Jimenez1, Markus Hess1, Hussein El Halas1, Gregor Bochenek1, Hala Mohammed2, Fahd Alzahrani2, Mohammed O Asiri2, Rami Hasan3, Aref Alamri2, Sultan Alotaibi3.
Abstract
Aim: We report the diagnostic evaluation of a confirmatory reverse transcription-PCR (RT-PCR) kit targeting the Middle East respiratory syndrome coronavirus (MERS-CoV) N gene. Material & methods: 33 patient samples from two collections sites in Riyadh, Saudi Arabia, which were pre-characterized via real-time RT-PCR targeting MERS-CoV orf1a and upE, and were tested using the MERS-CoV N gene, as a confirmatory assay. This diagnostic procedure follows a two-step diagnostics scheme, recommended by the WHO.Entities:
Keywords: MERS-CoV; WHO diagnostic scheme; diagnostics; emerging diseases; molecular diagnostics; preparedness; real-time RT-PCR
Mesh:
Substances:
Year: 2019 PMID: 31271059 PMCID: PMC7079715 DOI: 10.2217/fmb-2019-0067
Source DB: PubMed Journal: Future Microbiol ISSN: 1746-0913 Impact factor: 3.165
Figure 1.Schematic depictionof the two-step diagnostic scheme for the detection of MERS-CoV specific RNA by screening for two different sequence targets, e.g. upE and orf1a.
In case of inconsistent results of the screening assays, conformational sequencing or RT-PCR of a third target should be performed (modified from the diagnostic scheme recommended by WHO in 2012 [19]).
†Positive only for one of the two targets.
‡Where applicable: use of different/additional specimen type.
Pathogens tested for cross-reactivity with the RealStar® Middle East respiratory syndrome coronavirus (N Gene) reverse transcription-PCR kit 1.0.
| Pathogen | Material | Catalog number (provider) | Concentration (provider) | Concentration tested |
|---|---|---|---|---|
| Adenovirus | Genomic DNA | VR-1 (ATCC) | TCID50 ≥103.0 per 0.2 ml | Dilution 1:1000 |
| Genomic DNA | DSM 5571 (DSMZ) | 79.9 ng/μl | Dilution 1:200 | |
| Genomic DNA | DSM 19748 (DSMZ) | 112.5 ng/μl | Dilution 1:1000 | |
| Genomic DNA | DSM 4690 (DSMZ) | 253.5 ng/μl | Dilution 1:1000 | |
| hMPV | Genomic RNA | 0810164CFHI (Zeptometrix, hMPV 27 Type A2) | TCID50 ≥106.10 U/ml | Eluate 1:10 diluted |
| Human coronavirus NL63 | Genomic RNA | University Bonn | Not available | Dilution 1:10 |
| Human coronavirus 229E | Genomic RNA | University Bonn | Not available | Dilution 1:10 |
| Human coronavirus OC43 | Genomic RNA | University Bonn | Not available | Dilution 1:10 |
| Human coronavirus HKU1 | Genomic RNA | University Bonn | Not available | Dilution 1:10 |
| Influenza A virus | Genomic RNA | 0810252CFHI (Zeptometrix) | Not available | Dilution 1:10 |
| Influenza B virus | Genomic RNA | 0810255CFHI (Zeptometrix) | Not available | Dilution 1:10 |
| Genomic DNA | 33495 (ATCC) | Not available | Eluate 1:10 diluted | |
| Genomic DNA | DSM 7513 (DSMZ) | 163 ng/μl (diluted 1:500) | Dilution 1:500 | |
| Genomic DNA | 25618D-2 | ≥2 μg/46 μl | Dilution 1:100 | |
| Genomic DNA | DSM 22911 (DSMZ) | Not available (diluted 1:10) | Dilution 1:100 | |
| Parainfluenza virus | Genomic RNA | VR-94 (ATCC) | TCID50 ≥103.0 per 0.2 ml | Dilution 1:100 |
| Respiratory syncytial virus | Genomic RNA | VR-26D (ATCC) | 600 ng per 100 μl | Dilution 1:10 |
| Rhinovirus | Genomic RNA | NCPV (0112169) | Not available | Dilution 1:1000 |
| SARS-CoV | Genomic RNA | University Bonn | Not available | Dilution 1:10 |
| Genomic DNA | DSM 20566 (DSMZ) | 260 ng/μl (diluted 1:1000) | Dilution 1:1000 | |
| Genomic DNA | DSM20565 (DSMZ) | Not available | Dilution 1:10 |
ATCC: American-type culture collection; CoV: Coronavirus; DSMZ: Deutsche Sammlung von Mikroorganismen und Zellkulturen.
Diagnostic evaluation of suspected Middle East respiratory syndrome coronavirus specimens.
| Sample number | RealStar MERS-CoV RT-PCR kit 1.0 | RealStar MERS-CoV (N Gene) RT-PCR kit 1.0 | |||
|---|---|---|---|---|---|
| Internal controls (VIC) | Internal control (VIC) | ||||
| 2 | 33.39 | 34.52 | Valid | 34.05 | Valid |
| 3 | 32.75 | 37.47 | Valid | 36.20 | Valid |
| 4 | 30.00 | 29.84 | Valid | 30.85 | Valid |
| 5 | 34.92 | 38.77 | Valid | 38.92 | Valid |
| 6 | 34.90 | 35.89 | Valid | 37.22 | Valid |
| 7 | 31.00 | 31.94 | Valid | 31.26 | Valid |
| 8 | 17.31 | 17.46 | Valid | 20.36 | Valid |
| 11 | ND | ND | Valid | ND | Valid |
| 12 | ND | ND | Valid | ND | Valid |
| 13 | ND | ND | Valid | ND | Valid |
| 14 | ND | ND | Valid | ND | Valid |
| 15 | ND | ND | Valid | ND | Valid |
| 16 | ND | ND | Valid | ND | Valid |
| 17 | ND | ND | Valid | ND | Valid |
| 18 | ND | ND | Valid | ND | Valid |
| 19 | ND | ND | Valid | ND | Valid |
| 20 | ND | ND | Valid | ND | Valid |
| 21 | ND | ND | Valid | ND | Valid |
| 22 | 32.00 | 32.00 | Valid | 34.97 | Valid |
| 23 | 30.00 | 30.00 | Valid | 33.00 | Valid |
| 24 | 28.00 | 29.00 | Valid | 30.59 | Valid |
| 25 | 26.00 | 26.00 | Valid | 31.93 | Valid |
| 26 | 28.00 | 29.00 | Valid | 31.03 | Valid |
| 27 | 34.00 | 35.00 | Valid | 37.39 | Valid |
| 28 | 25.00 | 24.00 | Valid | 30.45 | Valid |
| 29 | 15.00 | 15.00 | Valid | 19.86 | Valid |
| 30 | 28.00 | 29.00 | Valid | 30.62 | Valid |
| 32 | 25.00 | 29.00 | Valid | 29.47 | Valid |
Bold values highlight samples with inconsistent outcome.
H1N1 positive.
FAM: MERS-CoV specific detection channel; MERS-CoV: Middle East respiratory syndrome coronavirus; ND: Not detected; RT-PCR: Reverse transcription-PCR; VIC: IC detection channel.