| Literature DB >> 31270391 |
Paweł Krukow1, Kamil Jonak2,3, Robert Karpiński4, Hanna Karakuła-Juchnowicz3.
Abstract
Introducing the Minimum Spanning Tree (MST) algorithms to neural networks science eliminated the problem of arbitrary setting of the threshold for connectivity strength. Despite these advantages, MST has been rarely used to study network abnormalities in schizophrenia. An MST graph mapping a network structure is its simplification, therefore, it is important to verify whether the reconfigured network is significantly related to the behavioural dimensions of the clinical picture of schizophrenia. 35 first-episode schizophrenia patients and 35 matched healthy controls underwent an assessment of information processing speed, cognitive inter-trial variability modelled with ex-Gaussian distributional analysis of reaction times and resting-state EEG recordings to obtain frequency-specific functional connectivity matrices from which MST graphs were computed. The patients' network had a more random structure and star-like arrangement with overloaded hubs positioned more posteriorly than it was in the case of the control group. Deficient processing speed in the group of patients was predicted by increased maximal betweenness centrality in beta and gamma bands, while decreased consistency in cognitive processing was predicted by the betweenness centrality of posterior nodes in the gamma band, together with duration of illness. The betweenness centrality of posterior nodes in the gamma band was also significantly correlated with positive psychotic symptoms in the clinical group.Entities:
Mesh:
Year: 2019 PMID: 31270391 PMCID: PMC6610093 DOI: 10.1038/s41598-019-46111-0
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Schematic illustration of MST-networks formation from the resting-state EEG recordings: (a) selection of thirty EEG artifacts-free epochs, each containing 4096 samples (approximately 8 seconds per epoch) from each participants, (b) computation of the functional connectivity matrices based on phase lag index (PLI) for every selected EEG epochs for each possible electrodes pairs, in every frequency band, (c) minimum spanning tree (MST) matrix calculation, based on previously obtained PLI matrices for all frequencies, (d) the MST graph reconstruction, being an output from the Brainwave software, (e) illustrative reconstruction of topological distribution of hubs and leaf nodes posted on a simplified cortical surface, created from averaged MST matrix in a given frequency band. Network was reconstructed keeping the rule of generating loop-less connections between the nodes. Analyses and computations depicted in points (a–d) were performed for each individual participant, while the topological network reconstruction (point e) has been prepared for groups, to show a qualitative model of networks with the approximate neuronal location of hubs, leaf nodes and connections.
Demographic, clinical and cognitive characteristics of the studied groups
| Characteristics | SZ (n = 35) M (SD) | HC (n = 35) M (SD) | Statistic value |
|---|---|---|---|
| Age (years) | 21.14 (2.95) | 21.54 (0.70) | F (1, 68) = 0.60, |
| Male/female | 17/18 | 15/20 | χ2 = 0.23, df = 1, |
| Education (years) | 13.85 (1.86) | 14.20 (1.36) | F (1, 68) = 0.76, |
| Premorbid IQ | 107.60 (6.66) | 107.82 (7.52) | F (1, 68) = 0.06, |
| Duration of illness (months) | 12.31 (5.65) | NA | NA |
| Duration of untreated psychosis (months) | 4.85 (4.79) | NA | NA |
| PANSS positive | 14.34 (4.73) | NA | NA |
| PANSS negative | 19.25 (6.14) | NA | NA |
| PANSS general | 34.87 (6.12) | NA | NA |
| PANSS total | 68.34 (10.53) | NA | NA |
| Risperidone equivalents | 4.37 (1.48) | NA | NA |
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| Total number of processed stimuli | 55.20 (13.16) | 74.20 (7.24) | F(1, 65) = 54.60, |
| Total number of errors | 3.11 (3.17) | 1.85 (2.39) | F(1, 65) = 3.51, |
| RTmean | 1685.76a (414.15) | 1212.39 (121.16) | F(1, 65) = 41.74, |
| iSD | 967.09a (599.86) | 602.55 (327.48) | F(1, 65) = 11.19, |
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| 990.44a (170.91) | 765.19 (68.91) | F(1, 65) = 51.52, |
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| 78.31a (63.78) | 90.81 (62.52) | F(1, 65) = 1.37, |
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| 673.93a (333.09) | 455.23 (143.84) | F(1, 65) = 13.65, |
Notes: SZ = first-episode schizophrenia patients, HC = healthy controls, PANSS = Positive and Negative Syndrome Scale, assessed during remission phase, NA = not applicable, RTmean = mean reaction time, iSD = individual standard deviation.
aall data given in milliseconds, bANCOVA with age, education and premorbid IQ as controlled covariates.
Bold font indicates statistically significant effects, including Bonferroni correction for multiple testing.
PLI and MST metrics significantly differentiated the studied groups and correlations between these indicators and ex-Gaussian parameters μ and τ in first-episode schizophrenia group (SZ).
| PLI and MST results | SZ | ηp2 | Correlations between MST and ex-Gaussian parameters | |
|---|---|---|---|---|
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| PLI | — | 0.007 | ||
| Diameter |
| −0.04 | 0.14 | |
| Leaf fraction |
| −0.11 | −0.22 | |
| R |
| 0.17 | −0.28 | |
| BCmax | — | 0.025 | ||
| BC global | — | 0.042 | ||
| BC anterior | — | 0.001 | ||
| BC posterior | ↑ | 0.06 | −0.05 | |
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| PLI | ↑ | 0.15 | 0.28 | |
| Diameter | — | 0.021 | ||
| Leaf fraction | — | 0.076 | ||
| R | — | 0.067 | ||
| BCmax | — | 0.018 | ||
| BC global | — | 0.007 | ||
| BC anterior | — | 0.035 | ||
| BC posterior | — | 0.045 | ||
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| PLI | ↓ | −0.26 | 0.28 | |
| Diameter | — | 0.001 | ||
| Leaf fraction | — | 0.002 | ||
| R | — | 0.003 | ||
| BCmax | — | 0.001 | ||
| BC global | — | 0.001 | ||
| BC anterior | — | 0.007 | ||
| BC posterior | — | 0.073 | ||
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| PLI | — | 0.006 | ||
| Diameter | — | 0.015 | ||
| Leaf fraction | — | 0.001 | ||
| R | — | 0.026 | ||
| BCmax | — | 0.023 | ||
| BC global | — | 0.001 | ||
| BC anterior | — | 0.007 | ||
| BC posterior | — | 0.074 | ||
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| PLI | — | 0.052 | ||
| Diameter | ↓ | −0.08 | 0.013 | |
| Leaf fraction | — | 0.045 | ||
| R | — | 0.003 | ||
| BCmax | ↑ | −0.19 | ||
| BC global | ↓ | −0.39 | 0.21 | |
| BC anterior | — | 0.001 | ||
| BC posterior | — | 0.048 | ||
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| PLI | — | 0.076 | ||
| Diameter | ↓ | − | 0.17 | |
| Leaf fraction | ↑ | 0.23 | 0.21 | |
| R | — | 0.035 | ||
| BCmax | ↑ | 0.29 | ||
| BC global | — | 0.019 | ||
| BC anterior | — | 0.006 | ||
| BC posterior | ↑ | 0.01 | ||
Note. Bold η2 represents significant effect sizes, ↑ result significantly (p < 0.01) higher in SZ group (n = 35, HC n = 35), ↓ result significantly (p < 0.01) lower in SZ group, -n.s. Correlations significance *p < 0.01, **p < 0.001
Bold font indicates statistically significant effects, including Bonferroni correction for multiple testing
Figure 2Delineative representation of minimum spanning trees with reference to the network types. (a) shows a path-like configuration, in which two end nodes are the leafs (light green) of the tree. Such model network has low leaf fraction, high diameter and low betweenness centrality. (b) presents a diagram of a well-balanced network containing five nodes and two hubs creating a “rich club”, constituted by two directly connected nodes with increased centrality. Relatively small amount of leaf nodes prevents the hubs from overloading. (c) is an example of a star-like tree, having a central, overloaded hub (red) connected with all nodes. This network is characterized by high leaf fraction, low diameter and high betweenness centrality. In an extreme form of a path-like network segregation processes prevail, because it takes a lot of steps to transfer information from the initial to the last node, while an extreme star-like network is dominated by integration processes because information flow from all nodes reaches one central hub and overload it.
Figure 3An illustrative comparison of the MST topologies differing with respect to: increased and decreased maximal betweenness centrality (a), and comparison of regionally diversified topologies with regard to betweenness centrality of nodes located in anterior versus posterior areas (b). Blue nodes are hubs, while light green nodes are leafs. The thickness of the lines corresponds to functional connectivity values based on the phase lag index algorithm. (a). Topography on the right side contains severely overloaded central hub (T5 electrode) positioned in the left temporal lobe, directly connected to seven other nodes. Compared with this substantially centralized topology, network organization showed on the left does not lead to hubs overloading, due to more balanced and dispersed distribution of connections between individual nodes. (b). The organization shown on the right contains more hubs located in the posterior part of cortical surface, especially in the right temporal and parietal lobes. The central hub, with the maximal BC in the entire network is located in the right temporal lobe (electrode T6). The topology displayed on the left contains more hubs in the anterior area and the central hub positioned within the right prefrontal cortex (electrode Fp2). Shown topologies were reconstructed according to pipeline presented in Fig. 1., on the basis of MST results obtained from our SZ patients (on the right) and healthy controls (on the left) in beta (a) and gamma (b) frequencies (see Supplementary Information: Figs S1 and S2. for row MST graph of both groups). Described between-groups differences were confirmed in statistical comparisons regarding BCmax in beta band and regional betweenness centrality in gamma frequency (Table 2).
Figure 4Correlation plots showing relationships between selected neural networks metrics and the ex-Gaussian parameters characterizing the distribution of reaction times (RTs) derived from the cognitive speed task performed by patients with first-episode schizophrenia. Left panel represents correlations between maximal betweenness centrality in gamma frequency and the average RTs (μ parameter), while the right panel displays the correlation between the centrality of nodes localized in the posterior part of the cortex and the most prolonged RTs being an indicator of processing inconsistency (τ parameter). In both cases, depicted associations were significant also after controlling for duration of untreated psychosis, duration of illness and risperidone equivalent.