Literature DB >> 31268598

Competing interaction partners modulate the activity of Sgs1 helicase during DNA end resection.

Kristina Kasaciunaite1, Fergus Fettes1, Maryna Levikova2, Peter Daldrop3, Roopesh Anand4, Petr Cejka4,5, Ralf Seidel1,3.   

Abstract

DNA double-strand break repair by homologous recombination employs long-range resection of the 5' DNA ends at the break points. In Saccharomyces cerevisiae, this process can be performed by the RecQ helicase Sgs1 and the helicase-nuclease Dna2. Though functional interplay between them has been shown, it remains unclear whether and how these proteins cooperate on the molecular level. Here, we resolved the dynamics of DNA unwinding by Sgs1 at the single-molecule level and investigated Sgs1 regulation by Dna2, the single-stranded DNA-binding protein RPA, and the Top3-Rmi1 complex. We found that Dna2 modulates the velocity of Sgs1, indicating that during end resection both proteins form a functional complex and couple their activities. Sgs1 drives DNA unwinding and feeds single-stranded DNA to Dna2 for degradation. RPA was found to regulate the processivity and the affinity of Sgs1 to the DNA fork, while Top3-Rmi1 modulated the velocity of Sgs1. We hypothesize that the differential regulation of Sgs1 activity by its protein partners is important to support diverse cellular functions of Sgs1 during the maintenance of genome stability.
© 2019 The Authors.

Entities:  

Keywords:  DNA repair; Dna2; RecQ helicases; homologous recombination; single molecule

Mesh:

Substances:

Year:  2019        PMID: 31268598      PMCID: PMC6601037          DOI: 10.15252/embj.2019101516

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  63 in total

1.  RecBCD enzyme is a bipolar DNA helicase.

Authors:  Mark S Dillingham; Maria Spies; Stephen C Kowalczykowski
Journal:  Nature       Date:  2003-06-19       Impact factor: 49.962

2.  Dna2 exhibits a unique strand end-dependent helicase function.

Authors:  Lata Balakrishnan; Piotr Polaczek; Subhash Pokharel; Judith L Campbell; Robert A Bambara
Journal:  J Biol Chem       Date:  2010-10-06       Impact factor: 5.157

3.  The full-length Saccharomyces cerevisiae Sgs1 protein is a vigorous DNA helicase that preferentially unwinds holliday junctions.

Authors:  Petr Cejka; Stephen C Kowalczykowski
Journal:  J Biol Chem       Date:  2010-01-19       Impact factor: 5.157

4.  Crystal structures of lambda exonuclease in complex with DNA suggest an electrostatic ratchet mechanism for processivity.

Authors:  Jinjin Zhang; Kimberly A McCabe; Charles E Bell
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-05       Impact factor: 11.205

5.  Structural and mechanistic insight into Holliday-junction dissolution by topoisomerase IIIα and RMI1.

Authors:  Nicolas Bocquet; Anna H Bizard; Wassim Abdulrahman; Nicolai B Larsen; Mahamadou Faty; Simone Cavadini; Richard D Bunker; Stephen C Kowalczykowski; Petr Cejka; Ian D Hickson; Nicolas H Thomä
Journal:  Nat Struct Mol Biol       Date:  2014-02-09       Impact factor: 15.369

6.  An N-terminal acidic region of Sgs1 interacts with Rpa70 and recruits Rad53 kinase to stalled forks.

Authors:  Anna Maria Hegnauer; Nicole Hustedt; Kenji Shimada; Brietta L Pike; Markus Vogel; Philipp Amsler; Seth M Rubin; Fred van Leeuwen; Aude Guénolé; Haico van Attikum; Nicolas H Thomä; Susan M Gasser
Journal:  EMBO J       Date:  2012-07-20       Impact factor: 11.598

7.  Dna2p helicase/nuclease is a tracking protein, like FEN1, for flap cleavage during Okazaki fragment maturation.

Authors:  Hui-I Kao; Judith L Campbell; Robert A Bambara
Journal:  J Biol Chem       Date:  2004-09-22       Impact factor: 5.157

8.  Comparison of nonhomologous end joining and homologous recombination in human cells.

Authors:  Zhiyong Mao; Michael Bozzella; Andrei Seluanov; Vera Gorbunova
Journal:  DNA Repair (Amst)       Date:  2008-08-20

9.  Replication intermediates that escape Dna2 activity are processed by Holliday junction resolvase Yen1.

Authors:  Gizem Ölmezer; Maryna Levikova; Dominique Klein; Benoît Falquet; Gabriele Alessandro Fontana; Petr Cejka; Ulrich Rass
Journal:  Nat Commun       Date:  2016-10-25       Impact factor: 14.919

10.  A novel role of the Dna2 translocase function in DNA break resection.

Authors:  Adam S Miller; James M Daley; Nhung Tuyet Pham; Hengyao Niu; Xiaoyu Xue; Grzegorz Ira; Patrick Sung
Journal:  Genes Dev       Date:  2017-03-23       Impact factor: 11.361

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  5 in total

1.  Bloom helicase mediates formation of large single-stranded DNA loops during DNA end processing.

Authors:  Chaoyou Xue; Sameer J Salunkhe; Nozomi Tomimatsu; Ajinkya S Kawale; Youngho Kwon; Sandeep Burma; Patrick Sung; Eric C Greene
Journal:  Nat Commun       Date:  2022-04-26       Impact factor: 17.694

Review 2.  DNA end resection during homologous recombination.

Authors:  Robert Gnügge; Lorraine S Symington
Journal:  Curr Opin Genet Dev       Date:  2021-07-28       Impact factor: 5.578

Review 3.  Unravelling the mechanisms of Type 1A topoisomerases using single-molecule approaches.

Authors:  Dian Spakman; Julia A M Bakx; Andreas S Biebricher; Erwin J G Peterman; Gijs J L Wuite; Graeme A King
Journal:  Nucleic Acids Res       Date:  2021-06-04       Impact factor: 16.971

Review 4.  Resolvases, Dissolvases, and Helicases in Homologous Recombination: Clearing the Road for Chromosome Segregation.

Authors:  Pedro A San-Segundo; Andrés Clemente-Blanco
Journal:  Genes (Basel)       Date:  2020-01-08       Impact factor: 4.096

5.  Distinct RPA domains promote recruitment and the helicase-nuclease activities of Dna2.

Authors:  Ananya Acharya; Kristina Kasaciunaite; Martin Göse; Vera Kissling; Raphaël Guérois; Ralf Seidel; Petr Cejka
Journal:  Nat Commun       Date:  2021-11-11       Impact factor: 14.919

  5 in total

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