Literature DB >> 31250400

Whole genome analysis of Aspergillus sojae SMF 134 supports its merits as a starter for soybean fermentation.

Kang Uk Kim1, Kyung Min Kim1, Yong-Ho Choi2, Byung-Serk Hurh2, Inhyung Lee3.   

Abstract

Aspergillus sojae is a koji (starter) mold that has been applied for food fermentation in Asia. The whole genome of A. sojae SMF 134, which was isolated from meju (Korean soybean fermented brick), was analyzed at the genomic level to evaluate its potential as a starter for soybean fermentation. The genome size was 40.1 Mbp, which was expected to be composed of eight chromosomes with 13,748 ORFs. Strain SMF 134 had a total of 151 protease genes, among which two more leucine aminopeptidase (lap) genes were found in addition to the previously known lap 1, and three γ-glutamyltranspeptidase (ggt) genes were newly identified. Such genomic characteristics of SMF 134 with many protease and flavor-related (lap and ggt) genes support its merits as a starter for soybean fermentation. In addition, this first complete genome of A. sojae will allow for further genetic studies to better understand the production of various enzymes, including proteases, LAPs, and GGTs, as well as other characteristics as a starter mold for soybean fermentation.

Entities:  

Keywords:  Aspergillus sojae; genome sequence; protease; soybean fermentation; starter mold

Mesh:

Substances:

Year:  2019        PMID: 31250400     DOI: 10.1007/s12275-019-9152-1

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  40 in total

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2.  Characterization of Aspergillus sojae Isolated from Meju, Korean Traditional Fermented Soybean Brick.

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Journal:  J Microbiol Biotechnol       Date:  2017-02-28       Impact factor: 2.351

3.  SMURF: Genomic mapping of fungal secondary metabolite clusters.

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4.  Analysis of agricultural commodities and foods for Alternaria mycotoxins.

Authors:  P M Scott
Journal:  J AOAC Int       Date:  2001 Nov-Dec       Impact factor: 1.913

Review 5.  Fungal sex and pathogenesis.

Authors:  Geraldine Butler
Journal:  Clin Microbiol Rev       Date:  2010-01       Impact factor: 26.132

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Journal:  Nature       Date:  2005-12-22       Impact factor: 49.962

7.  Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.

Authors:  James E Galagan; Sarah E Calvo; Christina Cuomo; Li-Jun Ma; Jennifer R Wortman; Serafim Batzoglou; Su-In Lee; Meray Baştürkmen; Christina C Spevak; John Clutterbuck; Vladimir Kapitonov; Jerzy Jurka; Claudio Scazzocchio; Mark Farman; Jonathan Butler; Seth Purcell; Steve Harris; Gerhard H Braus; Oliver Draht; Silke Busch; Christophe D'Enfert; Christiane Bouchier; Gustavo H Goldman; Deborah Bell-Pedersen; Sam Griffiths-Jones; John H Doonan; Jaehyuk Yu; Kay Vienken; Arnab Pain; Michael Freitag; Eric U Selker; David B Archer; Miguel A Peñalva; Berl R Oakley; Michelle Momany; Toshihiro Tanaka; Toshitaka Kumagai; Kiyoshi Asai; Masayuki Machida; William C Nierman; David W Denning; Mark Caddick; Michael Hynes; Mathieu Paoletti; Reinhard Fischer; Bruce Miller; Paul Dyer; Matthew S Sachs; Stephen A Osmani; Bruce W Birren
Journal:  Nature       Date:  2005-12-22       Impact factor: 49.962

8.  AUGUSTUS: ab initio prediction of alternative transcripts.

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Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

9.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169

10.  Genomic sequence of the aflatoxigenic filamentous fungus Aspergillus nomius.

Authors:  Geromy G Moore; Brian M Mack; Shannon B Beltz
Journal:  BMC Genomics       Date:  2015-07-28       Impact factor: 3.969

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  1 in total

1.  High molecular weight DNA extraction methods lead to high quality filamentous ascomycete fungal genome assemblies using Oxford Nanopore sequencing.

Authors:  Celine Petersen; Trine Sørensen; Klaus R Westphal; Lavinia I Fechete; Teis E Sondergaard; Jens L Sørensen; Kåre L Nielsen
Journal:  Microb Genom       Date:  2022-04
  1 in total

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