Literature DB >> 31244115

Are Explicit Solvent Models More Accurate than Implicit Solvent Models? A Case Study on the Menschutkin Reaction.

Junbo Chen1, Yihan Shao2, Junming Ho1.   

Abstract

In this work, contemporary quantum mechanical (QM) implicit solvent models (SMD, SM12, and COSMO-RS) and a molecular mechanical (MM) explicit solvent model were used to predict the aqueous free energy barrier of a simple Menschutkin reaction (NH3 + CH3Cl). Surprisingly, the explicit solvent approach performed the worst, while the implicit solvent models yielded reasonably accurate values that are in accord with available experimental data. The origin of the large error in the explicit solvent model was due to the use of a fixed set of Lennard-Jones parameters during the free energy perturbation (FEP) calculations. Further analyses indicate that M06-2X/6-31+G(d,p) yielded solute-solvent interaction energies that are in good agreement with benchmark DLPNO-CCSD(T)/CBS values. When end-state MM to M06-2X/6-31+G(d,p) corrections were added using FEP, it significantly improved the accuracy of the explicit solvent MM result and demonstrated that the accuracy of these models may be systematically improved with end-state corrections based on a validated QM level of theory.

Entities:  

Year:  2019        PMID: 31244115     DOI: 10.1021/acs.jpca.9b03995

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  6 in total

1.  How accurate are approximate quantum chemical methods at modelling solute-solvent interactions in solvated clusters?

Authors:  Junbo Chen; Bun Chan; Yihan Shao; Junming Ho
Journal:  Phys Chem Chem Phys       Date:  2020-02-19       Impact factor: 3.676

2.  Computational Study of the Stability of Pyrrolidine-Derived Iminium Ions: Exchange Equilibria between Iminium Ions and Carbonyl Compounds.

Authors:  Anna M Costa; Víctor Cascales; Alejandro Castro-Alvarez; Jaume Vilarrasa
Journal:  ACS Omega       Date:  2022-05-26

3.  A simplified charge projection scheme for long-range electrostatics in ab initio QM/MM calculations.

Authors:  Xiaoliang Pan; Kwangho Nam; Evgeny Epifanovsky; Andrew C Simmonett; Edina Rosta; Yihan Shao
Journal:  J Chem Phys       Date:  2021-01-14       Impact factor: 3.488

4.  Pattern-free generation and quantum mechanical scoring of ring-chain tautomers.

Authors:  Daniel S Levine; Mark A Watson; Leif D Jacobson; Claire E Dickerson; Haoyu S Yu; Art D Bochevarov
Journal:  J Comput Aided Mol Des       Date:  2020-08-24       Impact factor: 3.686

5.  Reactions of Arsenoplatin-1 with Protein Targets: A Combined Experimental and Theoretical Study.

Authors:  Iogann Tolbatov; Damiano Cirri; Matteo Tarchi; Tiziano Marzo; Cecilia Coletti; Alessandro Marrone; Luigi Messori; Nazzareno Re; Lara Massai
Journal:  Inorg Chem       Date:  2022-02-09       Impact factor: 5.165

6.  Mechanistic Insights Into the Anticancer Properties of the Auranofin Analog Au(PEt3)I: A Theoretical and Experimental Study.

Authors:  Iogann Tolbatov; Damiano Cirri; Lorella Marchetti; Alessandro Marrone; Cecilia Coletti; Nazzareno Re; Diego La Mendola; Luigi Messori; Tiziano Marzo; Chiara Gabbiani; Alessandro Pratesi
Journal:  Front Chem       Date:  2020-09-18       Impact factor: 5.221

  6 in total

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