Literature DB >> 31241330

Programmable Artificial Cells Using Histamine-Responsive Synthetic Riboswitch.

Mohammed Dwidar1, Yusuke Seike2, Shungo Kobori1, Charles Whitaker1, Tomoaki Matsuura2, Yohei Yokobayashi1.   

Abstract

Artificial cells that encapsulate DNA-programmable protein expression machinery are emerging as an attractive platform for studying fundamental cellular properties and applications in synthetic biology. However, interfacing these artificial cells with the complex and dynamic chemical environment remains a major and urgent challenge. We demonstrate that the repertoire of molecules that artificial cells respond to can be expanded by synthetic RNA-based gene switches, or riboswitches. We isolated an RNA aptamer that binds histamine with high affinity and specificity and used it to design robust riboswitches that activate protein expression in the presence of histamine. Finally, the riboswitches were incorporated in artificial cells to achieve controlled release of an encapsulated small molecule and to implement a self-destructive kill-switch. Synthetic riboswitches should serve as modular and versatile interfaces to link artificial cell phenotypes with the complex chemical environment.

Entities:  

Year:  2019        PMID: 31241330     DOI: 10.1021/jacs.9b03300

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

Review 1.  Engineering spatiotemporal organization and dynamics in synthetic cells.

Authors:  Alessandro Groaz; Hossein Moghimianavval; Franco Tavella; Tobias W Giessen; Anthony G Vecchiarelli; Qiong Yang; Allen P Liu
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2020-11-21

Review 2.  Synthetic cells in biomedical applications.

Authors:  Wakana Sato; Tomasz Zajkowski; Felix Moser; Katarzyna P Adamala
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2021-11-01

3.  Development of a histamine aptasensor for food safety monitoring.

Authors:  Mohammed Dwidar; Yohei Yokobayashi
Journal:  Sci Rep       Date:  2019-11-13       Impact factor: 4.379

4.  Artificial cells drive neural differentiation.

Authors:  Ö Duhan Toparlak; Jacopo Zasso; Simone Bridi; Mauro Dalla Serra; Paolo Macchi; Luciano Conti; Marie-Laure Baudet; Sheref S Mansy
Journal:  Sci Adv       Date:  2020-09-18       Impact factor: 14.136

Review 5.  Controlling Synthetic Cell-Cell Communication.

Authors:  Jefferson M Smith; Razia Chowdhry; Michael J Booth
Journal:  Front Mol Biosci       Date:  2022-01-05

6.  High-throughput screening of cell-free riboswitches by fluorescence-activated droplet sorting.

Authors:  Takeshi Tabuchi; Yohei Yokobayashi
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

Review 7.  Bottom-Up Construction of Complex Biomolecular Systems With Cell-Free Synthetic Biology.

Authors:  Nadanai Laohakunakorn; Laura Grasemann; Barbora Lavickova; Grégoire Michielin; Amir Shahein; Zoe Swank; Sebastian J Maerkl
Journal:  Front Bioeng Biotechnol       Date:  2020-03-24

8.  Regulation of spatiotemporal patterning in artificial cells by a defined protein expression system.

Authors:  Aoi Yoshida; Shunshi Kohyama; Kei Fujiwara; Saki Nishikawa; Nobuhide Doi
Journal:  Chem Sci       Date:  2019-10-16       Impact factor: 9.825

9.  Directed evolution of orthogonal RNA-RBP pairs through library-vs-library in vitro selection.

Authors:  Keisuke Fukunaga; Yohei Yokobayashi
Journal:  Nucleic Acids Res       Date:  2022-01-25       Impact factor: 16.971

10.  Attenuator LRR - a regulatory tool for modulating gene expression in Gram-positive bacteria.

Authors:  Xia Cai; Qian Wang; Yu Fang; Die Yao; Yunda Zhan; Baoju An; Bing Yan; Jun Cai
Journal:  Microb Biotechnol       Date:  2021-03-15       Impact factor: 5.813

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