| Literature DB >> 31239511 |
Theresa Guggolz1, Karin Meißner2, Martin Schwentner3, Angelika Brandt4.
Abstract
Laonice Malmgren, 1867 (Annelida: Spionidae) is a common polychaete genus in the deep-sea. Although most species are quite well studied morphologically, fragmentation and other damage that occurs during sampling often hampers morphological species identification of deep-sea specimens. In this study, we employ three molecular markers (16S, COI and 18S) to study the biodiversity and the distribution patterns of Laonice from the tropical North Atlantic and the Puerto Rico Trench. Based upon different molecular analyses (Automated Barcode Gap Discovery, pairwise genetic distances, phylogenetics, haplotype networks) we were able to identify and differentiate eight Laonice species. Up to four of these species co-occurred sympatrically at the same station. The majority of species were found at multiple stations and two species in the eastern as well as western Atlantic had ranges of up to 4,000 km. Genetic differentiation across these extensive geographic distances was very low. Surprisingly, one 16S haplotype was shared between individuals 2,776 km apart and individuals from the Caribbean and the abyssal plain in the eastern Atlantic (>3,389 km) differed in only a single mutation in 16S. Our results suggest that members of this genus successfully disperse across large geographic distances and are largely unaffected by topographic barriers.Entities:
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Year: 2019 PMID: 31239511 PMCID: PMC6592887 DOI: 10.1038/s41598-019-45807-7
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Map of Vema and PRT (modified after a map of N. Augustin).
Distances (in km) between collection localities. Areas: eastern Vema Fracture Zone (eVFZ), western Vema-Fracture Zone (wVFZ), Vema Transform Fault (VTF), Puerto Rico Trench (PRT).
| Area | eVFZ | VTF | wVFZ | PRT | |||
|---|---|---|---|---|---|---|---|
| Site | 2 | 4 | 6 | 8 | 9 | 11 | 14 |
| 2 | 0 | ||||||
| 4 | 659 | 0 | |||||
| 6 | 1,298 | 640 | 0 | ||||
| 8 | 1,925 | 1,269 | 630 | 0 | |||
| 9 | 2,503 | 1,851 | 1,216 | 589 | 0 | ||
| 11 | 2,776 | 2,125 | 1,492 | 865 | 276 | 0 | |
| 14 | 4,610 | 3,992 | 3,389 | 2,788 | 2,213 | 1,946 | 0 |
All Primers used in this study.
| Gene | Primer | Primer sequence 5′-3′ | Authors |
|---|---|---|---|
| COI | jgLCO1490 | TNTCNACNAAYCAYAARGAYATTGG | Geller |
| jgHCO2198 | TANACYTCNGGRTGNCCRAARAAYCA | Geller | |
| LCO1490 | GGTCAACAAATCATAAAGATATTG | Folmer | |
| HCO2198 | TAAACTTCAGGGTGACCAAAAAATCA | Folmer | |
| LCO2 | TCNACHAAYCATAAAGAYATTGGAAC | Designed by L. Krebes and R. Bastrop | |
| HCOout | CCAGGTAAAATTAAAATATAAACTTC | Carpenter & Wheeler[ | |
| 16S | 16Sar | CGCCTGTTTATCAAAAACAT | Palumbi[ |
| 16Sbr | CCGGTCTGAACTCAGATCACGT | Palumbi[ | |
| 16Sb-L | CCGGTCTGAACTCAGATCACGT | Palumbi | |
| 18S | Uni 18SF | GCTTGTCTCAGAGATTAAGCC | Dzikowski |
| HET 18SR | ACGGAAACCTTGTTACGA | Dzikowski |
Percentage of uncorrected p-distances within and among lineages for COI, 16S and 18S (see upper right corner). “X” means no or only one sequence available.
0 X 0.1 | 16S COI 18S | |||||||
18.7–19.9 21.9 0.9–1.3 | 0.4 0.0 0.3 | |||||||
16.2 23.0 0.7–0.8 | 10.7 17.4 0.3–0.6 | X X X | ||||||
17.0–23.0 21.7–22.6 1.9–2.1 | 16.1–20.4 20.3–20.7 1.4–1.8 | 15.8–21.4 20.2–20.7 1.3 | 0.0–1.4 0.0–0.7 0.0 | |||||
17.2 X 2.0–2.1 | 14.8–15.3 X 1.4–1.8 | 14.7 X 1.3 | 6.3–8.2 X 0.1 | X X X | ||||
17.5–19.4 23.0 1.8–1.9 | 14.8–17.0 20.4–20.5 1.3–1.6 | 15.0–17.3 20.2 1.2 | 8.2–12.7 14.0–14.8 0.1–0.2 | 7.1–8.2 X 0.2 | 0.0–1.7 X 0.0 | |||
18.5–21.9 21.9–22.0 1.8–1.9 | 15.3–17.1 20.2–20.7 1.3–1.6 | 15.1–15.5 20.5–20.7 1.2 | 8.2–10.8 15.3–15.9 0.1–0.2 | 4.7–5.1 X 0.2 | 2.8–4.0 8.6–8.8 0.0 | 0.0–0.2 0.5 0.0 | ||
18.5–19.7 22.3–22.7 2.0–2.8 | 15.8–16.4 22.4–22.9 1.5–2.5 | 15.4–17.1 20.7–21.0 1.4–2.1 | 4.1–8.2 11.7–12.4 0.1–0.9 | 7.1–8.2 X 0.2–0.7 | 10.9–13.2 17.0–17.5 0.2–0.9 | 6.4–7.3 14.2 –14.9 0.2–0.9 | 0.0–1.0 0.2–0.7 0.0 |
Population indices for 16S of selected Laonice species among sites and geographic areas. Nucleotide diversity, Tajima’s D and Fu’s Fs are reported only for the areas, not the individual sites. (eVFZ: eastern Vema Fracture Zone, wVFZ: western Vema-Fracture Zone, VTF: Vema Transform Fault).
| site | No. of ind. | No. of haplotypes | Nucleotide diversity ± SD | Tajima’s D (p-value) | Fu’s Fs (p-value) | |
|---|---|---|---|---|---|---|
| eVFZ | 2 | 18 | 5 | 0.0035 ± 0.0027 | −0.465 (0.601) | −0.679 (0.2630) |
| 4 | 8 | 6 | ||||
| 6 | 4 | 1 | ||||
| wVFZ | 9 | 3 | 2 | 0.0018 ± 0.0023 | ||
| eVFZ | 2 | 5 | 5 | 0.0084 ± 0.0055 | −1.174 (0.089) | −1.205 (0.098) |
| 4 | 3 | 3 | ||||
| VTF | 8 | 5 | 5 | 0.00187 ± 0.0019 | ||
| eVFZ | 6 | 3 | 3 | 0.0025 ± 0.0022 | −0.333 (0.465) | 0.261 (0.425) |
| VTF | 8 | 3 | 6 | 0.0021 ± 0.0020 | ||
| wVFZ | 9 | 2 | 4 | 0.0024 ± 0.0024 | ||
Pairwise Φst values among different sites for 16S of selected Laonice species among sites. (eVFZ: eastern Vema Fracture Zone, wVFZ: western Vema-Fracture Zone, VTF: Vema Transform Fault).
| eVFZ | site 4 | site 6 | wVFZ | |
|---|---|---|---|---|
| site 2 | site 9 | |||
| site 2 | 0.000 | |||
| site 4 | 0.000 | 0.000 | ||
| site 6 | 0.175 | 0.111 | 0.000 | |
| site 9 | 0.000 | 0.000 | 0.015 | 0.000 |
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| site 2 | 0.000 | |||
| site 4 | 0.000 | 0.000 | ||
| site 8 | 0.000 | 0.008 | 0.000 | |
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| site 6 | 0.000 | |||
| site 8 | 0.000 | 0.000 | ||
| site 9 | 0.000 | 0.000 | 0.000 |
Figure 2Phylogenetic tree of Laonice specimens from the Vema-Transit expedition based on mitochondrial 16S (a) and COI (b) gene fragments. Posterior probabilities shown next to the nodes (values below 0.8 are not shown). Morphological identification after Guggolz et al. 2018[24] are color coded (see legend in the middle).
Figure 3Haplotype networks of Laonice species from the Vema-Transit expedition of 16S (a), COI (b) and 18S (c) gene fragments.
Figure 4Phylogenetic tree of Laonice specimens from the Atlantic, Antarctic and Pacific Ocean based on the mitochondrial COI gene fragment. Posterior probabilities shown next to the nodes (values below 0.8 are not shown). Sampling localities and depth are colour coded (see legend in upper right-hand corner).
Morphological differences (investigated by Guggolz et al. 2018[24]) of the eight Laonice species (Laonice A–G). Question marks are used, if material was insufficient to see characters, respectively.
| Species name | No. of spec. characters observed | Nuchal organ end | Start Neuropodial hooks/number of teeth | Lateral pouches start | Sabre chaeta start | Remarks |
|---|---|---|---|---|---|---|
| 2 | end of fragment; 18th chaetiger | 9th chaetiger | no pouches seen | prominent dorsolateral ridge 8–11th | ||
| 2 | ?? | ?? | 3rd chaetiger | Peri- und Prostomium fused; very short; 2nd and 3rd branchia different shape than | ||
| 1 | 9th chaetiger | ?? | ?? | 11th chaetiger | Pro-und peristomium not fused; 3–4 rows of cappillaries | |
| 10 | 8th − 10th chaetiger | 13–15th chaetiger/5 teeth in side view | 3rd chaetiger | 9th - 11th | no eyes; occipital antennae prominent; Pro-and Peristomium not fused; 3–4 rows of capillaries | |
| 1 | ?? | 16th chaetiger | 3rd chaetiger | ?? | 2 rows of capillaries; very short | |
| 3 | 9th chaetiger | 9th - 10th chaetiger | 3rd chaetiger | 10th chaetiger | ||
| 2 | 8th chaetiger | ?? | 4th chaetiger | 8th chaetiger | ||
| 4 | 10th chaetiger | 14th/15th chaetiger | 3rd chaetiger | 11th chaetiger |