Literature DB >> 31218624

UV Resonance Raman Spectroscopy as a Tool to Probe Membrane Protein Structure and Dynamics.

DeeAnn K Asamoto1, Judy E Kim2.   

Abstract

Ultraviolet resonance Raman (UVRR) spectroscopy is a vibrational technique that reveals structures and dynamics of biological macromolecules without the use of extrinsic labels. By tuning the Raman excitation wavelength to the deep UV region (e.g., 228 nm), Raman signal from tryptophan and tyrosine residues are selectively enhanced, allowing for the study of these functionally relevant amino acids in lipid and aqueous environments. In this chapter, we present methods on the UVRR data acquisition and analysis of the tryptophan vibrational modes of a model β-barrel membrane protein, OmpA, in folded and unfolded conformations.

Entities:  

Keywords:  Lipids; Membrane proteins; Small unilamellar vesicles; Tryptophan; UV resonance Raman; Vibrational spectroscopy

Mesh:

Substances:

Year:  2019        PMID: 31218624      PMCID: PMC6874512          DOI: 10.1007/978-1-4939-9512-7_14

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  10 in total

1.  Electronic and vibrational polarizabilities of the twenty naturally occurring amino acids.

Authors:  Salvatore Millefiori; Andrea Alparone; Arcangelo Millefiori; Angelo Vanella
Journal:  Biophys Chem       Date:  2007-11-17       Impact factor: 2.352

Review 2.  UV resonance Raman studies of molecular structure and dynamics: applications in physical and biophysical chemistry.

Authors:  S A Asher
Journal:  Annu Rev Phys Chem       Date:  1988       Impact factor: 12.703

3.  Characterization of individual tryptophan side chains in proteins using Raman spectroscopy and hydrogen-deuterium exchange kinetics.

Authors:  T Miura; H Takeuchi; I Harada
Journal:  Biochemistry       Date:  1988-01-12       Impact factor: 3.162

4.  Cation-pi interactions in structural biology.

Authors:  J P Gallivan; D A Dougherty
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

5.  Tryptophan-lipid interactions in membrane protein folding probed by ultraviolet resonance Raman and fluorescence spectroscopy.

Authors:  Katheryn M Sanchez; Guipeun Kang; Beijing Wu; Judy E Kim
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

6.  Ultraviolet resonance Raman spectroscopy of folded and unfolded states of an integral membrane protein.

Authors:  Katheryn M Sanchez; Tiffany J Neary; Judy E Kim
Journal:  J Phys Chem B       Date:  2008-06-28       Impact factor: 2.991

7.  Insights into Protein Structure and Dynamics by Ultraviolet and Visible Resonance Raman Spectroscopy.

Authors:  Ignacio López-Peña; Brian S Leigh; Diana E Schlamadinger; Judy E Kim
Journal:  Biochemistry       Date:  2015-07-29       Impact factor: 3.162

8.  Extension of the tryptophan chi2,1 dihedral angle-W3 band frequency relationship to a full rotation: correlations and caveats.

Authors:  Laura J Juszczak; Ruel Z B Desamero
Journal:  Biochemistry       Date:  2009-03-31       Impact factor: 3.162

9.  The role of tryptophan side chains in membrane protein anchoring and hydrophobic mismatch.

Authors:  Armando J de Jesus; Toby W Allen
Journal:  Biochim Biophys Acta       Date:  2012-09-16

10.  Hydrogen bonding and solvent polarity markers in the uv resonance raman spectrum of tryptophan: application to membrane proteins.

Authors:  Diana E Schlamadinger; Jonathan E Gable; Judy E Kim
Journal:  J Phys Chem B       Date:  2009-11-05       Impact factor: 2.991

  10 in total
  1 in total

1.  The structural basis for monoclonal antibody 5D2 binding to the tryptophan-rich loop of lipoprotein lipase.

Authors:  John G Luz; Anne P Beigneux; DeeAnn K Asamoto; Cuiwen He; Wenxin Song; Christopher M Allan; Jazmin Morales; Yiping Tu; Adam Kwok; Thomas Cottle; Muthuraman Meiyappan; Loren G Fong; Judy E Kim; Michael Ploug; Stephen G Young; Gabriel Birrane
Journal:  J Lipid Res       Date:  2020-07-20       Impact factor: 5.922

  1 in total

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