Literature DB >> 31213386

The Nuclear Pore Complex in Cell Type-Specific Chromatin Structure and Gene Regulation.

Jiayu Sun1, Yuming Shi1, Eda Yildirim2.   

Abstract

Nuclear pore complex (NPC)-mediated nucleocytoplasmic trafficking is essential for key cellular processes, such as cell growth, cell differentiation, and gene regulation. The NPC has also been viewed as a nuclear architectural platform that impacts genome function and gene expression by mediating spatial and temporal coordination between transcription factors, chromatin regulatory proteins, and transcription machinery. Recent findings have uncovered differential and cell type-specific expression and distinct chromatin-binding patterns of individual NPC components known as nucleoporins (Nups). Here, we examine recent studies that investigate the functional roles of NPCs and Nups in transcription, chromatin organization, and epigenetic gene regulation in the context of development and disease.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Keywords:  chromatin organization; chromatin structure; epigenetic gene regulation; nuclear pore complex (NPC); nucleoporin (Nup); transcription

Mesh:

Substances:

Year:  2019        PMID: 31213386     DOI: 10.1016/j.tig.2019.05.006

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  19 in total

1.  Gene Balance Predicts Transcriptional Responses Immediately Following Ploidy Change in Arabidopsis thaliana.

Authors:  Michael J Song; Barney I Potter; Jeff J Doyle; Jeremy E Coate
Journal:  Plant Cell       Date:  2020-03-17       Impact factor: 11.277

Review 2.  The role of CRWN nuclear proteins in chromatin-based regulation of stress response genes.

Authors:  Junsik Choi; Eric J Richards
Journal:  Plant Signal Behav       Date:  2019-11-22

3.  Identification and localization of Nup170 in the microsporidian Nosema bombycis.

Authors:  Ruisha Shang; Feng Zhu; Yu Li; Ping He; Jingru Qi; Yong Chen; Fuzhen Sun; Yiling Zhang; Qiang Wang; Zhongyuan Shen
Journal:  Parasitol Res       Date:  2021-03-26       Impact factor: 2.289

Review 4.  Molecular mechanisms of transgenerational epigenetic inheritance.

Authors:  Maximilian H Fitz-James; Giacomo Cavalli
Journal:  Nat Rev Genet       Date:  2022-01-04       Impact factor: 53.242

5.  Nup98-dependent transcriptional memory is established independently of transcription.

Authors:  Pau Pascual-Garcia; Shawn C Little; Maya Capelson
Journal:  Elife       Date:  2022-03-15       Impact factor: 8.140

Review 6.  The nuclear pore complex and the genome: organizing and regulatory principles.

Authors:  Pau Pascual-Garcia; Maya Capelson
Journal:  Curr Opin Genet Dev       Date:  2021-02-06       Impact factor: 5.578

Review 7.  Nuclear pore complexes in development and tissue homeostasis.

Authors:  Valeria Guglielmi; Stephen Sakuma; Maximiliano A D'Angelo
Journal:  Development       Date:  2020-12-15       Impact factor: 6.868

Review 8.  One Ring to Rule them All? Structural and Functional Diversity in the Nuclear Pore Complex.

Authors:  Javier Fernandez-Martinez; Michael P Rout
Journal:  Trends Biochem Sci       Date:  2021-02-06       Impact factor: 14.264

9.  Nucleoporin 153 links nuclear pore complex to chromatin architecture by mediating CTCF and cohesin binding.

Authors:  Shinichi Kadota; Jianhong Ou; Yuming Shi; Jeannie T Lee; Jiayu Sun; Eda Yildirim
Journal:  Nat Commun       Date:  2020-05-25       Impact factor: 14.919

10.  Facilitation of Gastrointestinal (GI) Tract Microbiome-Derived Lipopolysaccharide (LPS) Entry Into Human Neurons by Amyloid Beta-42 (Aβ42) Peptide.

Authors:  Walter J Lukiw; Wenhong Li; Taylor Bond; Yuhai Zhao
Journal:  Front Cell Neurosci       Date:  2019-12-06       Impact factor: 5.505

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