Literature DB >> 31213191

Achieving explanatory depth and spatial breadth in infectious disease modelling: Integrating active and passive case surveillance.

Luca Nelli1, Heather M Ferguson1, Jason Matthiopoulos1.   

Abstract

Ideally, the data used for robust spatial prediction of disease distribution should be both high-resolution and spatially expansive. However, such in-depth and geographically broad data are rarely available in practice. Instead, researchers usually acquire either detailed epidemiological data with high resolution at a small number of active sampling sites, or more broad-ranging but less precise data from passive case surveillance. We propose a novel inferential framework, capable of simultaneously drawing insights from both passive and active data types. We developed a Bayesian latent point process approach, combining active data collection in a limited set of points, where in-depth covariates are measured, with passive case detection, where error-prone, large-scale disease data are accompanied only by coarse or remotely-sensed covariate layers. Using the example of malaria, we tested our method's efficiency under several hypothetical scenarios of reported incidence in different combinations of imperfect detection and spatial complexity of the environmental variables. We provide a simple solution to a widespread problem in spatial epidemiology, combining latent process modelling and spatially autoregressive modelling. By using active sampling and passive case detection in a complementary way, we achieved the best-of-both-worlds, in effect, a formal calibration of spatially extensive, error-prone data by localised, high-quality data.

Entities:  

Keywords:  Bayesian modelling; N-mixture models; disease mapping; imperfect detection; latent point process; spatial epidemiology

Mesh:

Year:  2019        PMID: 31213191     DOI: 10.1177/0962280219856380

Source DB:  PubMed          Journal:  Stat Methods Med Res        ISSN: 0962-2802            Impact factor:   3.021


  6 in total

1.  Participatory mapping identifies risk areas and environmental predictors of endemic anthrax in rural Africa.

Authors:  Roman Biek; Tiziana Lembo; Olubunmi R Aminu; Taya L Forde; Divine Ekwem; Paul Johnson; Luca Nelli; Blandina T Mmbaga; Deogratius Mshanga; Mike Shand; Gabriel Shirima; Markus Walsh; Ruth N Zadoks
Journal:  Sci Rep       Date:  2022-06-22       Impact factor: 4.996

2.  Combining school-catchment area models with geostatistical models for analysing school survey data from low-resource settings: Inferential benefits and limitations.

Authors:  Peter M Macharia; Nicolas Ray; Caroline W Gitonga; Robert W Snow; Emanuele Giorgi
Journal:  Spat Stat       Date:  2022-06-29

3.  Mapping the endemicity and seasonality of clinical malaria for intervention targeting in Haiti using routine case data.

Authors:  Ewan Cameron; Alyssa J Young; Katherine A Twohig; Emilie Pothin; Darlene Bhavnani; Amber Dismer; Jean Baptiste Merilien; Karen Hamre; Phoebe Meyer; Arnaud Le Menach; Justin M Cohen; Samson Marseille; Jean Frantz Lemoine; Marc-Aurèle Telfort; Michelle A Chang; Kimberly Won; Alaine Knipes; Eric Rogier; Punam Amratia; Daniel J Weiss; Peter W Gething; Katherine E Battle
Journal:  Elife       Date:  2021-06-01       Impact factor: 8.140

4.  Distance sampling for epidemiology: an interactive tool for estimating under-reporting of cases from clinic data.

Authors:  Luca Nelli; Moussa Guelbeogo; Heather M Ferguson; Daouda Ouattara; Alfred Tiono; Sagnon N'Fale; Jason Matthiopoulos
Journal:  Int J Health Geogr       Date:  2020-04-20       Impact factor: 3.918

5.  Fine-scale distribution of malaria mosquitoes biting or resting outside human dwellings in three low-altitude Tanzanian villages.

Authors:  Arnold S Mmbando; Emmanuel W Kaindoa; Halfan S Ngowo; Johnson K Swai; Nancy S Matowo; Masoud Kilalangongono; Godfrey P Lingamba; Joseph P Mgando; Isaac H Namango; Fredros O Okumu; Luca Nelli
Journal:  PLoS One       Date:  2021-01-28       Impact factor: 3.240

6.  Cloud-Based System for Effective Surveillance and Control of COVID-19: Useful Experiences From Hubei, China.

Authors:  Mengchun Gong; Li Liu; Xin Sun; Yue Yang; Shuang Wang; Hong Zhu
Journal:  J Med Internet Res       Date:  2020-04-22       Impact factor: 5.428

  6 in total

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