| Literature DB >> 31211682 |
Bitrus Yakubu, Ishaya Yohanna Longdet, Tony Horsefall Jen, Dinchi Tyem Davou, Emmanuel Obishakin.
Abstract
The mass migration that occurred during 2009-2013 and after the insurgency in northeastern Nigeria could have increased malaria incidence and Plasmodium falciparum genetic diversity in North Central Nigeria. To determine P. falciparum sequence diversity in this region, we screened 282 samples collected in regional clinics during 2015-2018 for Plasmodium spp. and, with positive samples, determined P. falciparum infection complexity and allele diversity using PCR. Of 34 P. falciparum-positive samples, 39 msp1, 31 msp2, and 13 glurp alleles were detected, and 88% of infections were polyclonal. We identified trimorphic and dimorphic allele combinations in a high percentage of samples, indicative of a high infection complexity in the study population. High genetic diversity is a catalyst for the evolution of drug-resistant alleles. Improved measures (e.g., better drug quality, diagnostics) are needed to control P. falciparum transmission and reduce the potential for the emergence of drug resistance in Nigeria.Entities:
Keywords: Abuja; Federal Capital Territory; Kaduna; Kogi; Nasarawa; Nigeria; Plasmodium falciparum; Plateau; allele; complexity; diversity; genetic; genotypes; glurp; infection; insurgency; malaria; msp1; msp2; nested PCR; parasites; polyclonal; population displacement; resistance
Mesh:
Year: 2019 PMID: 31211682 PMCID: PMC6590735 DOI: 10.3201/eid2507.181614
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Figure 1Sampling site locations in study of genetic diversity of Plasmodium falciparum spp., North Central Nigeria, 2015–2018. The Jabi region was the sampling site in Abuja.
Primer sequences used for PCRs to screen and genotype samples collected in study of genetic diversity of Plasmodium falciparum parasites, North Central Nigeria, 2015–2018*
| PCR description | Primer name or type: sequence, 5′→3′ | Size, bp | Reference |
|---|---|---|---|
| Nest-1 | rPLU1: TCAAAGATTAAGCCATGCAAGTGA | 620 | ( |
| rPLU5: CCTGTTGTTGCCTTAAACTCC | |||
| Nest-2, genus-specific PCR | rPLU3: TTTTTATAAGGATAACTACGGAAAAGCTGT | 240 | ( |
| rPLU4: TACCCGTCATAGCCATGTTAGGCCAATACC | |||
| rFAL1: TTAAACTGGTTTGGGAAAACCAAATATATT | 205 | ( | |
| rFAL2: ACACAATGAACTCAATCATGACTACCCGTC | |||
| Forward: CTAGAAGCTTTAGAAGATGCAGTATTG | Variable | ( | |
| Reverse: CTTAAATAGTATTCTAATTCAAGTGGATCA | |||
|
| Forward: AAATGAAGAAGAAATTACTACAAAAGGTGC | Variable | ( |
| Reverse: GCTTGCATCAGCTGGAGGGCTTGCACCAGA | |||
|
| Forward: AAATGAAGGAACAAGTGGAACAGCTGTTAC | Variable | ( |
| Reverse: ATCTGAAGGATTTGTACGTCTTGAATTACC | |||
|
| Forward: TAAAGGATGGAGCAAATACTCAAGTTGTTG | Variable | ( |
| Reverse: CATCTGAAGGATTTGCAGCACCTGGAGATC | |||
| Forward: ATGAAGGTAATTAAAACATTGTCTATTATA | Variable | ( | |
| Reverse: CTTTGTTACCATCGGTACATTCTT | |||
|
| Forward: AATACTAAGAGTGTAGGTGCARATGCTCCA | Variable | ( |
| Reverse: TTTTATTTGGTGCATTGCCAGAACTTGAAC | |||
| IC/3D7 | Forward: AGAAGTATGGCAGAAAGTAAKCCTYCTACT | Variable | ( |
| Reverse: GATTGTAATTCGGGGGATTCAGTTTGTTCG | |||
| Forward: TGAATTTGAAGATGTTCACACTGAAC | Variable | ( | |
| Reverse: GTGGAATTGCTTTTTCTTCAACACTAA | |||
|
| Forward: TGTTCACACTGAACAATTAGATTTAGATCA | Variable | ( |
| Reverse: GTGGAATTGCTTTTTCTTCAACACTAA |
*glurp, glutamate-rich protein; msp1, merozoite surface protein 1; msp2, merozoite surface protein 2.
Figure 2Screening PCR results of persons with Plasmodium falciparum parasite infections, North Central Nigeria, 2015–2018. Lane M, 50-bp DNA marker (ThermoFisher Scientific, https://www.thermofisher.com); lanes 1–4, archived blood samples from Nisa Premier Hospital (Jabi, Federal Capital Territory, Nigeria); lanes 5–15, archived blood samples from Kogi Specialist Hospital (Lokoja, Kogi State, Nigeria); lane 16, positive control. Samples positive for P. falciparum had a PCR product size of 205 bp.
Alleles of genes detected in Plasmodium falciparum isolates, North Central Nigeria, 2015–2018*
| Allele family | No. positive by PCR | No. alleles | Allele size range, bp | Mean MOI† | % Polyclonal |
|---|---|---|---|---|---|
|
| 32 | ||||
|
| 32 | 16 | 100–916 | 2.63 | 68 |
|
| 21 | 13 | 100–1,200 | 2.38 | 73 |
|
| 22 | 10 | 100–1,100 | 2.23 | 64 |
|
| 29 | ||||
|
| 17 | 16 | 150–1,130 | 2.52 | 53 |
|
| 28 | 15 | 300–1,200 | 2.21 | 68 |
|
| 31 | 13 | 200–1,550 | 1.03 | 23 |
*glurp, glutamate-rich protein; MOI, multiplicity of infection; msp1, merozoite surface protein 1; msp2, merozoite surface protein 2. †Defined as number of parasite clones per sample.
Distribution of msp 1, msp 2, and glurp clones detected in previous studies conducted in southwestern Nigeria, 2004–2014, and North Central Nigeria, 2015–2018*
| Study | Region (state or territory) | No. samples | No. alleles† | Mean MO‡ | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
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| Happi et al. ( | Southwestern (Ogun) | 47 | 4 | 2 | 4 | 9 | 4 | 5 | – | |
| Olasehinde et al. ( | Southwestern (Ogun) | 100 | 4 | 3 | 1 | 3 | 3 | – | 1.1 | |
| Oyebola et al. ( | Southwestern (Lagos) | 100 | 3 | 2 | 1 | 3 | 3 | – | 1.4 | |
| Bamidele Abiodun et al. ( | Southwestern (Lagos) | 78 | 2 | 2 | 1 | – | – | – | 1.4 | |
| This study | North Central (Plateau, Nasarawa, Kogi, Kaduna, FCT) | 54 | 16 | 13 | 10 | 16 | 15 | 13 | 2.4 | |
*FDT, Federal Capital Territory; glurp, glutamate-rich protein; MOI, multiplicity of infection; msp1, merozoite surface protein 1; msp2, merozoite surface protein 2. †Total number alleles found, regardless of size. ‡Defined as number of parasite clones per sample.
Figure 3Allele frequency of msp1 in persons with Plasmodium falciparum infection, North Central Nigeria, 2015–2018. The K1 allele of size 200–250 bp was detected at the highest frequency (n = 18). The next highest detected were the MAD20 allele of fragment size 150–200 bp (n = 11) and the RO33 alleles of fragment sizes 100–150 bp (n = 9) and 650–700 bp (n = 9).
Figure 4Allele frequency of msp2 in persons with Plasmodium falciparum infection, North Central Nigeria, 2015–2018. The most frequently detected alleles were the FC27 allele of size 250–300 bp (n = 9) and the IC/3D7 allele of size 400–450 bp (n = 9).
Figure 5Allele frequency of glurp in persons with Plasmodium falciparum infection, North Central Nigeria, 2015–2018. The allele with the highest frequency (n = 11) was 900–950 bp in size.