| Literature DB >> 31210014 |
Abdelhabib Semlali1,2, Mikhlid Almutairi3, Narasimha Reddy Parine2, Abdullah Al Amri2, Rafa Almeer3, Mohammad S Alanazi2, Mahmoud Rouabhia1.
Abstract
BACKGROUND: Thymic stromal Lymphopoeitin (TSLP) is a key cytokine involved in inflammation and cancer progression. TSLP gene polymorphisms have been associated with increased susceptibility to cancer progression in different organs. We performed a control case study to examine the correlation of expression and polymorphisms of three nucleotides in TSLP with breast cancer (BC) risk in Saudi Arabian females.Entities:
Keywords: TSLP; breast cancer; gene expression; polymorphism
Mesh:
Substances:
Year: 2019 PMID: 31210014 PMCID: PMC6687655 DOI: 10.1002/mgg3.813
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Selected clinical characteristics of Female Saudi patients with BC and the normal controls
| Variable | Character | Patients | Controls |
|---|---|---|---|
| Total persons | – | 127 (100%) | 116 (100%) |
| Age (Years) | ≤48 | 45 (35.43%) | 62 (53.45%) |
| Median age (48 ± 8.2) | >48 | 82 (64.57%) | 54 (46.55%) |
| Estrogen receptor | ER+ | 76 (59.84%) | – |
| ER− | 49 (38.58%) | – | |
| Undetermined | 2 (1.57%) | ||
| Progesterone receptor | PR+ | 71 (55.91%) | – |
| PR− | 55 (43.31%) | – | |
| Undetermined | 1 (0.79%) | ||
| HER Status | HER+ | 49 (38.58%) | – |
| HER− | 78 (61.42%) | – |
Figure 1Thymic stromal lympho‐protein (TSLP) protein expression in breast cancer and normal matching tissues. Immunohistochemistry was performed by using specific TSLP antibodies (Panel 1A) n = 10. TSLP‐ positive staining was estimated and presented in (Panel) as follows B: 0 points, no positive color; 1 point, <20% positive staining; 2 points, 21%–50% positive staining; 3 points, 51%–75% positive staining; and 4 points, >75% positive staining. This is presented in Panel B
Distribution of genotype and allele frequencies of TSLP gene SNPs in Female Saudi patients with BC and the normal controls
| SNP | Genotype/allele | Breast | Control | OR | 95% CI |
|
|
|---|---|---|---|---|---|---|---|
| rs10043985 |
|
|
| ||||
| AA | 86 (0.91) | 91 (0.98) | Ref | ||||
| AC | 9 (0.09) | 2 (0.02) | 4.762 | 1.000–22.666 | 4.58 |
| |
| CC | 0 (0.00) | 0 (0.00) | 1.058 | 0.021–53.90 | nan | 1.000 | |
| AC + CC | 9 (0.09) | 2 (0.02) | 4.762 | 1.000–22.666 | 4.58 |
| |
| A | 181 (0.95) | 184 (0.99) | Ref | ||||
| C | 9 (0.05) | 2 (0.01) | 4.575 | 0.975–21.464 | 4.44 |
| |
| rs2289276 |
|
|
| ||||
| CC | 74 (0.47) | 77 (0.44) | Ref | ||||
| CT | 60 (0.38) | 85 (0.48) | 0.7345 | 0.46397–1.16277 | 1.73684 | 0.186061 | |
| TT | 24 (0.15) | 14 (0.08) | 1.7838 | 0.85764–3.71003 | 2.43526 | 0.108448 | |
| CT + TT | 84 (53) | 99 (0.56) | 0.8829 | 0.57336–1.35949 | 0.31998 | 0.571550 | |
| C | 208 (0.66) | 239 (0.68) | Ref | ||||
| T | 108 (0.34) | 113 (0.32) | 1.0982 | 0.79534–1.51638 | 0.32383 | 0.5695 | |
| rs3806933 |
|
|
| ||||
| CC | 0 (0.00) | 1 (0.01) | Ref | ||||
| CT | 30 (0.32) | 21 (0.11) | 4.256 | 0.165–109.523 | 1.39 | 0.23834 | |
| TT | 65 (0.68) | 162 (0.88) | 1.209 | 0.049–30.067 | 0.40 | 0.52682 | |
| CT + TT | 95 (1.0) | 183 (0.99) | 1.561 | 0.063–38.694 | 0.52 | 0.47163 | |
| C | 30 (0.16) | 23 (0.06) | Ref | ||||
| T | 160 (0.84) | 345 (0.94) | 0.356 | 0.200–0.632 | 13.27 |
|
Values in bold represent significant results.
Abbreviation: Ref, Reference allele.
p < 0.05.
p < 0.005.
Genotype and allele frequencies of TSLP gene SNPs in Female Saudi patients with BC and normal controls based on age at BC diagnosis
| SNP | Genotype/allele | Breast | Control | OR | 95% CI |
|
|
|---|---|---|---|---|---|---|---|
| Aged below 48 years | |||||||
| rs10043985 |
|
|
| ||||
| AA | 48 (0.91) | 51 (0.96) | Ref | ||||
| AC | 5 (0.09) | 2 (0.04) | 2.656 | 0.492–14.346 | 1.38 | 0.24068 | |
| CC | 0 (0.00) | 0 (0.00) | 1.062 | 0.021–54.572 | nan | 1.000 | |
| AC + CC | 5 (0.09) | 2 (0.04) | 2.656 | 0.492–14.346 | 1.38 | 0.24068 | |
| A | 101 (0.95) | 104 (0.98) | Ref | ||||
| C | 5 (0.05) | 2 (0.02) | 2.574 | 0.488–13.573 | 1.33 | 0.44614 | |
| rs2289276 |
|
|
| ||||
| CC | 32 (0.43) | 35 (0.40) | Ref | ||||
| CT | 30 (0.41) | 45 (0.51) | 0.72917 | 0.37471–1.41893 | 0.866562 | 0.350871 | |
| TT | 12 (0.16) | 8 (0.09) | 1.64063 | 0.59459–4.5269 | 0.922956 | 0.328989 | |
| CT + TT | 42 (0.57) | 53 (60) | 0.86675 | 0.46278–1.62335 | 0.199627 | 0.655138 | |
| C | 94 (0.64) | 115 (0.65) | Ref | ||||
| T | 54 (0.36) | 61 (0.35) | 1.08301 | 0.68609–1.70958 | 0.117257 | 0.7322 | |
| rs3806933 |
|
|
| ||||
| CC | 0 (0.00) | 1 (0.01) | Ref | ||||
| CT | 18 (0.35) | 11 (0.12) | 4.826 | 0.18–128.789 | 1.55 | 0.21288 | |
| TT | 34 (0.65) | 79 (0.87) | 1.302 | 0.052–32.762 | 0.43 | 0.51260 | |
| CT + TT | 52 (1.0) | 90 (0.99) | 1.740 | 0.070–43.497 | 0.58 | 0.44810 | |
| C | 18 (0.17) | 13 (0.07) | Ref | ||||
| T | 86 (0.83) | 169 (0.93) | 0.368 | 0.172–0.785 | 7.08 |
| |
| Aged above 48 years | |||||||
| rs10043985 |
|
|
| ||||
| AA | 38 (0.90) | 40 (1.0) | Ref | ||||
| AC | 4 (0.10) | 0 (0.00) | 9.468 | 0.493–181.768 | 4.00 |
| |
| CC | 0 (0.00) | 0 (0.00) | 1.052 | 0.020–54.343 | nan | 1.000 | |
| AC + CC | 4 (0.10) | 0 (0.00) | 9.468 | 0.493–181.768 | 4.00 |
| |
| A | 80 (0.95) | 80 (1.0) | Ref | ||||
| C | 4 (0.05) | 0 (0.00) | |||||
| rs2289276 |
|
|
| ||||
| CC | 42 (0.50) | 42 (0.48) | Ref | ||||
| CT | 30 (0.36) | 40 (0.45) | 0.75 | 0.39627–1.4195 | 0.78252 | 0.374683 | |
| TT | 12 (0.14) | 6 (0.07) | 2 | 0.68652–5.82649 | 1.652778 | 0.177718 | |
| CT + TT | 42 (0.50) | 46 (0.52) | 0.91304348 | 0.50196–1.66078 | 0.088843 | 0.7656 | |
| C | 114 (0.68) | 124 (0.70) | Ref | ||||
| T | 54 (0.32) | 52 (0.30) | 1.12955466 | 0.71455–1.78559 | 0.272005 | 0.6019 | |
| rs3806933 |
|
|
| ||||
| CC | 0 (0.00) | 0 (0.00) | Ref | ||||
| CT | 12 (0.28) | 10 (0.11) | 1.190 | 0.022–65.315 | nan | 1.0000 | |
| TT | 31 (0.72) | 83 (0.89) | 0.377 | 0.007–19.423 | nan | 1.0000 | |
| CT + TT | 43 (1.0) | 93 (1.0) | 0.465 | 0.009–23.836 | nan | 1.0000 | |
| C | 12 (0.14) | 10 (0.05) | Ref | ||||
| T | 74 (0.86) | 176 (0.95) | 0.350 | 0.145–0.846 | 5.82 |
| |
Values in bold represent significant results.
Abbreviation: Ref, Reference allele.
p < 0.05.
Genotype and allele frequencies of TSLP gene SNPs in Female Saudi patients with BC and the normal controls based on the status of Estrogen Receptor
| SNP | Genotype/allele | Breast | Control | OR | 95% CI |
|
|
|---|---|---|---|---|---|---|---|
| Estrogen positive | |||||||
| rs10043985 |
|
|
| ||||
| AA | 37 (0.93) | 91 (0.98) | Ref | ||||
| AC | 3 (0.07) | 2 (0.02) | 3.689 | 0.592–22.98 | 2.21 | 0.13692 | |
| CC | 0 (0.00) | 0 (0.00) | 2.440 | 0.048–125.249 | nan | 1.000 | |
| AC + CC | 3 (0.07) | 2 (0.02) | 3.689 | 0.592–22.98 | 2.21 | 0.13692 | |
| A | 77 (0.96) | 184 (0.99) | Ref | ||||
| C | 3 (0.04) | 2 (0.01) | 3.584 | 0.587–21.877 | 2.17 | 0.24922 | |
| rs2289276 |
|
|
| ||||
| CC | 41 (0.48) | 77 (0.44) | Ref | ||||
| CT | 34 (0.40) | 85 (0.48) | 0.75122 | 0.4337–1.30119 | 1.044194 | 0.305218 | |
| TT | 10 (0.12) | 14 (0.08) | 1.34146 | 0.54779–3.28507 | 0.415045 | 0.528221 | |
| CT + TT | 44 (0.52) | 99 (0.56) | 0.83469 | 0.49657–1.40303 | 0.465517 | 0.495752 | |
| C | 116 (0.68) | 239 (0.68) | Ref | ||||
| T | 54 (0.32) | 113 (0.32) | 0.98459 | 0.66473–1.45836 | 0.006004 | 0.9382 | |
| rs3806933 |
|
|
| ||||
| CC | 0 (0.00) | 1 (0.01) | Ref | ||||
| CT | 11 (0.28) | 21 (0.11) | 1.605 | 0.060–42.633 | 0.52 | 0.47271 | |
| TT | 29 (0.72) | 162 (0.88) | 0.545 | 0.022–13.693 | 0.18 | 0.67237 | |
| CT + TT | 40 (1.0) | 183 (0.99) | 0.662 | 0.026–16.549 | 0.22 | 0.64029 | |
| C | 11 (0.14) | 23 (0.06) | Ref | ||||
| T | 69 (0.86) | 345 (0.94) | 0.418 | 0.195–0.897 | 5.27 |
| |
| Estrogen negative | |||||||
| rs10043985 |
|
|
| ||||
| AA | 47 (0.90) | 91 (0.98) | Ref | ||||
| AC | 5 (0.1) | 2 (0.02) | 4.840 | 0.905–25.899 | 4.05 |
| |
| CC | 0 (0.00) | 0 (0.00) | 1.926 | 0.038–98.610 | nan | 1.000 | |
| AC + CC | 5 (0.1) | 2 (0.02) | 4.840 | 0.905–25.899 | 4.05 |
| |
| A | 99 (0.95) | 184 (0.99) | Ref | ||||
| C | 5 (0.05) | 2 (0.01) | 4.646 | 0.885–24.386 | 3.94 | 0.11327 | |
| rs2289276 |
|
|
| ||||
| CC | 31 (0.46) | 77 (0.44) | Ref | ||||
| CT | 25 (0.37) | 85 (0.48) | 0.73055 | 0.39676–1.34516 | 1.019656 | 0.310392 | |
| TT | 11 (0.16) | 14 (0.08) | 1.95161 | 0.79904–4.76671 | 2.198352 | 0.157128 | |
| CT + TT | 36 (0.53) | 99 (0.56) | 0.90323 | 0.51331–1.58932 | 0.124674 | 0.724552 | |
| C | 87 (0.65) | 239 (0.68) | Ref | ||||
| T | 47 (0.35) | 113 (0.32) | 1.14261 | 0.75114–1.7381 | 0.388282 | 0.5370 | |
| rs3806933 |
|
|
| ||||
| CC | 0 (0.00) | 1 (0.01) | Ref | ||||
| CT | 17 (0.33) | 21 (0.11) | 2.442 | 0.094–63.751 | 0.79 | 0.37318 | |
| TT | 35 (0.67) | 162 (0.88) | 0.655 | 0.026–16.422 | 0.22 | 0.64225 | |
| CT + TT | 52 (1.0) | 183 (0.99) | 0.858 | 0.034–21.381 | 0.28 | 0.59421 | |
| C | 17 (0.16) | 23 (0.06) | Ref | ||||
| T | 87 (0.84) | 345 (0.94) | 0.341 | 0.175–0.666 | 10.66 |
| |
Values in bold represent significant results
Abbreviations: Ref, Reference allele.
p < 0.05.
p < 0.005.