| Literature DB >> 31209778 |
Doris Leithner1,2, Blanca Bernard-Davila1, Danny F Martinez1, Joao V Horvat1, Maxine S Jochelson1, Maria Adele Marino1,3, Daly Avendano1,4, R Elena Ochoa-Albiztegui1, Elizabeth J Sutton1, Elizabeth A Morris1, Sunitha B Thakur1,5, Katja Pinker6,7.
Abstract
PURPOSE: To compare annotation segmentation approaches and to assess the value of radiomics analysis applied to diffusion-weighted imaging (DWI) for evaluation of breast cancer receptor status and molecular subtyping. PROCEDURES: In this IRB-approved HIPAA-compliant retrospective study, 91 patients with treatment-naïve breast malignancies proven by image-guided breast biopsy, (luminal A, n = 49; luminal B, n = 8; human epidermal growth factor receptor 2 [HER2]-enriched, n = 11; triple negative [TN], n = 23) underwent multiparametric magnetic resonance imaging (MRI) of the breast at 3 T with dynamic contrast-enhanced MRI, T2-weighted and DW imaging. Lesions were manually segmented on high b-value DW images and segmentation ROIS were propagated to apparent diffusion coefficient (ADC) maps. In addition in a subgroup (n = 79) where lesions were discernable on ADC maps alone, these were also directly segmented there. To derive radiomics signatures, the following features were extracted and analyzed: first-order histogram (HIS), co-occurrence matrix (COM), run-length matrix (RLM), absolute gradient, autoregressive model (ARM), discrete Haar wavelet transform (WAV), and lesion geometry. Fisher, probability of error and average correlation, and mutual information coefficients were used for feature selection. Linear discriminant analysis followed by k-nearest neighbor classification with leave-one-out cross-validation was applied for pairwise differentiation of receptor status and molecular subtyping. Histopathologic results were considered the gold standard.Entities:
Keywords: Breast cancer; Diffusion-weighted; Magnetic resonance imaging; Molecular subtypes; Radiomics; Receptors
Mesh:
Substances:
Year: 2020 PMID: 31209778 PMCID: PMC7062654 DOI: 10.1007/s11307-019-01383-w
Source DB: PubMed Journal: Mol Imaging Biol ISSN: 1536-1632 Impact factor: 3.488
Fig. 1a The ADC map for radiomic analysis in a 44-year-old patient with a luminal B invasive ductal carcinoma in the left breast with b manual region of interest (ROI) placement.
Results of groupwise texture-based cancer classifications using tumor segmentation on the ADC map
| Subtypes/receptor status | Luminal A | Luminal B | HER2-enriched | TN | HR positive | HER2 positive | HR negative | HER2 negative | All others |
|---|---|---|---|---|---|---|---|---|---|
| Luminal A | – | 61.9 % (POE) | – | – | – | – | 60.8 % (Fisher) | ||
| Luminal B | – | – | – | – | – | ||||
| HER2-enriched | – | – | – | – | |||||
| TN | 61.9 % (POE) | – | 73.9 % (Fisher) | 76.4 % (MI) | – | – | 73.4 % (POE) | ||
| HR positive | – | – | 73.9 % (Fisher) | – | – | 60.8 % (MI) | – | 60.8 % (MI) | |
| HER2 positive | – | – | – | 76.4 % (MI) | – | – | – | 79.8 % (MI) | 79.8 % (MI) |
| HR negative | – | – | – | – | 60.8 % (MI) | – | – | – | 60.8 % (MI) |
| HER2 negative | – | – | – | – | – | 79.8 % (MI) | – | – | 79.8 % (MI) |
| All others | 60.8 % (Fisher) | 73.4 % (POE) | 60.8 % (MI) | 79.8 % (MI) | 60.8 % (MI) | 79.8 % (MI) | – |
Accuracies > 80% are italicized
HER2 human epidermal growth factor receptor 2, HR hormone receptor, MI mutual information, POE probability of error and average correlation, TN triple negative
Results of groupwise texture-based cancer classifications using tumor segmentation on high b-value DWI and transfer to the ADC map
| Subtypes/receptor status | Luminal A | Luminal B | HER2-enriched | TN | HR positive | HER2 positive | HR negative | HER2 negative | All others |
|---|---|---|---|---|---|---|---|---|---|
| Luminal A | – | 75 % (MI) | – | – | – | – | 64.8 % (POE) | ||
| Luminal B | – | 71 % (Fisher) | – | – | – | – | |||
| HER2-enriched | – | 79.4 % (Fisher) | 77.9 % (Fisher) | – | – | – | |||
| TN | 75 % (MI) | 71 % (Fisher) | 79.4 % (Fisher) | – | 73.8 % (POE) | 66.7 % (Fisher) | – | – | 73.6 % (MI) |
| HR positive | – | – | 77.9 % (Fisher) | 73.8 % (POE) | – | – | 63.7 % (MI) | – | 63.7 % (MI) |
| HER2 positive | – | – | – | 66.7 % (Fisher) | – | – | – | 73.6 % (Fisher) | 73.6 % (Fisher) |
| HR negative | – | – | – | – | 63.7 % (MI) | – | – | – | 63.7 % (MI) |
| HER2 negative | – | – | – | – | – | 73.6 % (Fisher) | – | – | 73.6 % (Fisher) |
| All others | 64.8 % (POE) | 73.6 % (MI) | 63.7 % (MI) | 73.6 % (Fisher) | 63.7 % (MI) | 73.6 % (Fisher) | – |
Accuracies > 80% are italicized
HER2 human epidermal growth factor receptor 2, HR hormone receptor, MI mutual information, POE probability of error and average correlation, TN triple negative
Fig. 2a ADC map of a 49-year-old patient with a luminal A cancer in the right breast. b ADC map of a 67-year-old patient with a luminal B cancer in the right breast. In our patient collective, radiomic signatures derived from DWI differentiated luminal A from luminal B cancers with an accuracy of 91.5 % when tumor segmentation was performed on the ADC map (89.5 % when segmented on high b-value DWI and copied to the ADC map). (DWI, diffusion-weighted imaging; ADC, apparent diffusion coefficient).