Literature DB >> 32559637

Fluorescent Biosensors for Neuronal Metabolism and the Challenges of Quantitation.

Dorothy Koveal1, Carlos Manlio Díaz-García1, Gary Yellen2.   

Abstract

Over the past decade, genetically encoded fluorescent biosensors that report metabolic changes have become valuable tools for understanding brain metabolism. These sensors have been targeted to specific brain regions and cell types in different organisms to track multiple metabolic processes at single cell (and subcellular) resolution. Here, we review genetically encoded biosensors used to study metabolism in the brain. We particularly focus on the principles needed to use these sensors quantitatively while avoiding false inferences from variations in sensor fluorescence that arise from differences in expression level or environmental influences such as pH or temperature.
Copyright © 2020. Published by Elsevier Ltd.

Entities:  

Mesh:

Year:  2020        PMID: 32559637      PMCID: PMC7646541          DOI: 10.1016/j.conb.2020.02.011

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  90 in total

1.  Neuronal lactate levels depend on glia-derived lactate during high brain activity in Drosophila.

Authors:  Andrés González-Gutiérrez; Andrés Ibacache; Andrés Esparza; Luis Felipe Barros; Jimena Sierralta
Journal:  Glia       Date:  2019-12-26       Impact factor: 7.452

2.  Green Fluorescent Protein-Based Glucose Indicators Report Glucose Dynamics in Living Cells.

Authors:  Marie Mita; Motoki Ito; Kazuki Harada; Izumi Sugawara; Hiroshi Ueda; Takashi Tsuboi; Tetsuya Kitaguchi
Journal:  Anal Chem       Date:  2019-03-22       Impact factor: 6.986

3.  Synthesis of Janelia Fluor HaloTag and SNAP-Tag Ligands and Their Use in Cellular Imaging Experiments.

Authors:  Jonathan B Grimm; Timothy A Brown; Brian P English; Timothée Lionnet; Luke D Lavis
Journal:  Methods Mol Biol       Date:  2017

4.  Apollo-NADP(+): a spectrally tunable family of genetically encoded sensors for NADP(+).

Authors:  William D Cameron; Cindy V Bui; Ashley Hutchinson; Peter Loppnau; Susanne Gräslund; Jonathan V Rocheleau
Journal:  Nat Methods       Date:  2016-02-15       Impact factor: 28.547

5.  In Vivo Evidence for a Lactate Gradient from Astrocytes to Neurons.

Authors:  Philipp Mächler; Matthias T Wyss; Maha Elsayed; Jillian Stobart; Robin Gutierrez; Alexandra von Faber-Castell; Vincens Kaelin; Marc Zuend; Alejandro San Martín; Ignacio Romero-Gómez; Felipe Baeza-Lehnert; Sylvain Lengacher; Bernard L Schneider; Patrick Aebischer; Pierre J Magistretti; L Felipe Barros; Bruno Weber
Journal:  Cell Metab       Date:  2015-11-19       Impact factor: 27.287

6.  A genetically encoded single-wavelength sensor for imaging cytosolic and cell surface ATP.

Authors:  Mark A Lobas; Rongkun Tao; Jun Nagai; Mira T Kronschläger; Philip M Borden; Jonathan S Marvin; Loren L Looger; Baljit S Khakh
Journal:  Nat Commun       Date:  2019-02-12       Impact factor: 14.919

7.  Diversity in ATP concentrations in a single bacterial cell population revealed by quantitative single-cell imaging.

Authors:  Hideyuki Yaginuma; Shinnosuke Kawai; Kazuhito V Tabata; Keisuke Tomiyama; Akira Kakizuka; Tamiki Komatsuzaki; Hiroyuki Noji; Hiromi Imamura
Journal:  Sci Rep       Date:  2014-10-06       Impact factor: 4.379

8.  A general method to fine-tune fluorophores for live-cell and in vivo imaging.

Authors:  Jonathan B Grimm; Anand K Muthusamy; Yajie Liang; Timothy A Brown; William C Lemon; Ronak Patel; Rongwen Lu; John J Macklin; Philipp J Keller; Na Ji; Luke D Lavis
Journal:  Nat Methods       Date:  2017-09-04       Impact factor: 28.547

9.  A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters.

Authors:  Kiryl D Piatkevich; Erica E Jung; Christoph Straub; Changyang Linghu; Demian Park; Ho-Jun Suk; Daniel R Hochbaum; Daniel Goodwin; Eftychios Pnevmatikakis; Nikita Pak; Takashi Kawashima; Chao-Tsung Yang; Jeffrey L Rhoades; Or Shemesh; Shoh Asano; Young-Gyu Yoon; Limor Freifeld; Jessica L Saulnier; Clemens Riegler; Florian Engert; Thom Hughes; Mikhail Drobizhev; Balint Szabo; Misha B Ahrens; Steven W Flavell; Bernardo L Sabatini; Edward S Boyden
Journal:  Nat Chem Biol       Date:  2018-02-26       Impact factor: 15.040

10.  Single-fluorophore biosensors for sensitive and multiplexed detection of signalling activities.

Authors:  Sohum Mehta; Yong Zhang; Richard H Roth; Jin-Fan Zhang; Albert Mo; Brian Tenner; Richard L Huganir; Jin Zhang
Journal:  Nat Cell Biol       Date:  2018-09-24       Impact factor: 28.824

View more
  8 in total

Review 1.  Principles and functions of metabolic compartmentalization.

Authors:  Liron Bar-Peled; Nora Kory
Journal:  Nat Metab       Date:  2022-10-20

Review 2.  The metabolic basis of epilepsy.

Authors:  Jong M Rho; Detlev Boison
Journal:  Nat Rev Neurol       Date:  2022-03-31       Impact factor: 44.711

3.  Neurophotonic tools for microscopic measurements and manipulation: status report.

Authors:  Ahmed S Abdelfattah; Sapna Ahuja; Taner Akkin; Srinivasa Rao Allu; Joshua Brake; David A Boas; Erin M Buckley; Robert E Campbell; Anderson I Chen; Xiaojun Cheng; Tomáš Čižmár; Irene Costantini; Massimo De Vittorio; Anna Devor; Patrick R Doran; Mirna El Khatib; Valentina Emiliani; Natalie Fomin-Thunemann; Yeshaiahu Fainman; Tomas Fernandez-Alfonso; Christopher G L Ferri; Ariel Gilad; Xue Han; Andrew Harris; Elizabeth M C Hillman; Ute Hochgeschwender; Matthew G Holt; Na Ji; Kıvılcım Kılıç; Evelyn M R Lake; Lei Li; Tianqi Li; Philipp Mächler; Evan W Miller; Rickson C Mesquita; K M Naga Srinivas Nadella; U Valentin Nägerl; Yusuke Nasu; Axel Nimmerjahn; Petra Ondráčková; Francesco S Pavone; Citlali Perez Campos; Darcy S Peterka; Filippo Pisano; Ferruccio Pisanello; Francesca Puppo; Bernardo L Sabatini; Sanaz Sadegh; Sava Sakadzic; Shy Shoham; Sanaya N Shroff; R Angus Silver; Ruth R Sims; Spencer L Smith; Vivek J Srinivasan; Martin Thunemann; Lei Tian; Lin Tian; Thomas Troxler; Antoine Valera; Alipasha Vaziri; Sergei A Vinogradov; Flavia Vitale; Lihong V Wang; Hana Uhlířová; Chris Xu; Changhuei Yang; Mu-Han Yang; Gary Yellen; Ofer Yizhar; Yongxin Zhao
Journal:  Neurophotonics       Date:  2022-04-27       Impact factor: 4.212

4.  A high-throughput multiparameter screen for accelerated development and optimization of soluble genetically encoded fluorescent biosensors.

Authors:  Dorothy Koveal; Paul C Rosen; Dylan J Meyer; Carlos Manlio Díaz-García; Yongcheng Wang; Li-Heng Cai; Peter J Chou; David A Weitz; Gary Yellen
Journal:  Nat Commun       Date:  2022-05-25       Impact factor: 17.694

5.  A perspective on astrocyte regulation of neural circuit function and animal behavior.

Authors:  Johannes Hirrlinger; Axel Nimmerjahn
Journal:  Glia       Date:  2022-03-17       Impact factor: 8.073

Review 6.  Illuminating the Brain With X-Rays: Contributions and Future Perspectives of High-Resolution Microtomography to Neuroscience.

Authors:  Paulla Vieira Rodrigues; Katiane Tostes; Beatriz Pelegrini Bosque; João Vitor Pereira de Godoy; Dionisio Pedro Amorim Neto; Carlos Sato Baraldi Dias; Matheus de Castro Fonseca
Journal:  Front Neurosci       Date:  2021-03-17       Impact factor: 4.677

Review 7.  Organelle transporters and inter-organelle communication as drivers of metabolic regulation and cellular homeostasis.

Authors:  Aakriti Jain; Roberto Zoncu
Journal:  Mol Metab       Date:  2022-03-25       Impact factor: 8.568

8.  Heterogeneous Expression of Nuclear Encoded Mitochondrial Genes Distinguishes Inhibitory and Excitatory Neurons.

Authors:  Meghan E Wynne; Alicia R Lane; Kaela S Singleton; Stephanie A Zlatic; Avanti Gokhale; Erica Werner; Duc Duong; Jennifer Q Kwong; Amanda J Crocker; Victor Faundez
Journal:  eNeuro       Date:  2021-08-09
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.