| Literature DB >> 31207150 |
Chang Liu1,2, Feimeng An1,2, Yuju Cao3, Jiaqi Wang1,2, Ye Tian1,2, Huiqiang Wu4, Jianzhong Wang2.
Abstract
BACKGROUND: Alcohol-induced osteonecrosis of femoral head (ONFH) is a complex disease and genetic factors are one of the causes. The purpose of this study is to investigate the effects of RETN (resistin; OMIM: 605565) and LDLR (low density lipoprotein receptor; OMIM: 606945) polymorphisms on the risk of alcohol-induced ONFH in Chinese Han population.Entities:
Keywords: zzm321990LDLRzzm321990; zzm321990RETNzzm321990; alcohol-induced osteonecrosis of femoral head; single nucleotide polymorphisms
Mesh:
Substances:
Year: 2019 PMID: 31207150 PMCID: PMC6687866 DOI: 10.1002/mgg3.822
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Characteristics of the participants
| Variables | Mean ± |
| |
|---|---|---|---|
| Cases ( | Controls ( | ||
| Age (years) | 42.68 ± 12.88 | 43.80 ± 8.38 | 0.302 |
| TC (mmol/L) | 4.65 ± 0.92 | 4.66 ± 0.88 | 0.938 |
| TG (mmol/L) | 1.89 ± 1.28 | 2.10 ± 1.12 | 0.084 |
| HDL‐C (mmol/L) | 1.04 ± 0.24 | 1.08 ± 0.19 | 0.099 |
| LDL‐C (mmol/L) | 2.73 ± 0.85 | 2.71 ± 0.74 | 0.869 |
| TC/HDL‐C | 4.62 ± 1.15 | 4.38 ± 0.81 | 0.017 |
| TG/HDL‐C | 1.98 ± 1.58 | 2.02 ± 1.14 | 0.759 |
| LDL‐C/HDL‐C | 2.70 ± 0.86 | 2.56 ± 0.72 | 0.086 |
| Clinical stages | |||
| Stage II | 54 | ||
| Stage III | 89 | ||
| Stage IV | 58 | ||
| Hip lesions | |||
| Unilateral | 44 | ||
| Bilateral | 157 | ||
TC, total cholesterol; TG, triglycerides; LDL‐C, low‐density lipoprotein‐cholesterol; LDL‐C, high‐density lipoprotein‐cholesterol.
p value was calculated by Independent samples t test.
p < 0.05 indicates statistical significance.
Basic information of candidate SNPs in this study
| SNP | Gene | Chromosome | alleles | MAF |
| ORs | 95% CI |
| ||
|---|---|---|---|---|---|---|---|---|---|---|
| A/B | case | control | for HWE | |||||||
| rs7408174 |
| 19 | C/T | 0.271 | 0.206 | 1.000 | 1.43 | 1.03 | 1.98 | 0.032 |
| rs34861192 |
| 19 | A/G | 0.135 | 0.199 | 0.826 | 0.63 | 0.43 | 0.92 | 0.016 |
| rs3219175 |
| 19 | A/G | 0.144 | 0.201 | 0.826 | 0.67 | 0.46 | 0.97 | 0.032 |
| rs3745367 |
| 19 | A/G | 0.373 | 0.423 | 0.885 | 0.81 | 0.61 | 1.08 | 0.150 |
| rs3745368 |
| 19 | A/G | 0.173 | 0.138 | 0.547 | 1.30 | 0.88 | 1.91 | 0.181 |
| rs3745369 |
| 19 | C/G | 0.381 | 0.313 | 0.254 | 1.35 | 1.01 | 1.81 | 0.045 |
| rs1477341 |
| 19 | A/T | 0.526 | 0.463 | 0.887 | 1.29 | 0.97 | 1.71 | 0.075 |
| rs12611067 |
| 19 | T/G | 0.319 | 0.321 | 0.194 | 0.99 | 0.74 | 1.34 | 0.951 |
| rs14158 |
| 19 | A/G | 0.400 | 0.388 | 0.882 | 1.05 | 0.79 | 1.40 | 0.718 |
| rs2738464 |
| 19 | G/C | 0.278 | 0.294 | 0.125 | 0.93 | 0.68 | 1.26 | 0.630 |
| rs2738465 |
| 19 | G/A | 0.485 | 0.495 | 0.480 | 0.96 | 0.73 | 1.27 | 0.778 |
Reference Sequence and version number (RETN: NG_023447.1; LDLR: NG_009060.1).
Abbreviations: SNP, single nucleotide polymorphism; HWE, Hardy‐Weinberg equilibrium; OR, odds ratio; CI, confidence interval; MAF, minor allele frequency.
p was calculated by Chi‐squared test.
p < 0.05 indicates statistical significance.
Analysis of the association between SNPs and alcohol‐induced ONFH risk in males
| SNP | Model | Genotype | case | control | OR (95% CI) |
|
|---|---|---|---|---|---|---|
| rs7408174 | Codominant | T/T | 105 | 126 | 1.00 | 0.050 |
| C/T | 83 | 67 | 1.51 (1.00–2.29) | |||
| C/C | 13 | 8 | 2.02 (0.80–5.08) | |||
| Dominant | T/T | 105 | 126 | 1.00 | 0.028 | |
| C/T‐C/C | 96 | 75 | 1.57 (1.05–2.34) | |||
| Recessive | T/T‐C/T | 188 | 193 | 1.00 | 0.246 | |
| C/C | 13 | 8 | 1.71 (0.69–4.23) | |||
| Log‐additive | — | — | — | 1.47 (1.05–2.06) | 0.024 | |
| rs34861192 | Codominant | G/G | 146 | 128 | 1.00 | 0.032 |
| A/G | 47 | 66 | 0.62 (0.39–0.96) | |||
| A/A | 3 | 7 | 0.36 (0.09–1.43) | |||
| Dominant | G/G | 146 | 128 | 1.00 | 0.017 | |
| A/G‐A/A | 50 | 73 | 0.59 (0.38–0.91) | |||
| Recessive | G/G‐G/A | 193 | 194 | 1.00 | 0.211 | |
| A/A | 3 | 7 | 0.42 (0.11–1.64) | |||
| Log‐additive | — | — | — | 0.61 (0.41–0.90) | 0.013 | |
| rs3219175 | Codominant | G/G | 146 | 127 | 1.00 | 0.066 |
| A/G | 52 | 67 | 0.67 (0.43–1.03) | |||
| A/A | 3 | 7 | 0.36 (0.09–1.42) | |||
| Dominant | G/G | 146 | 127 | 1.00 | 0.036 | |
| A/G‐A/A | 55 | 74 | 0.64 (0.42–0.97) | |||
| Recessive | G/G‐G/A | 198 | 194 | 1.00 | 0.197 | |
| A/A | 3 | 7 | 0.41 (0.10–1.60) | |||
| Log‐additive | — | — | — | 0.65 (0.44–0.95) | 0.025 | |
| rs3745369 | Codominant | G/G | 80 | 91 | 1.00 | 0.007 |
| C/G | 80 | 94 | 0.97 (0.63–1.48) | |||
| C/C | 34 | 16 | 2.50 (1.28–4.90) | |||
| Dominant | G/G | 80 | 91 | 1.00 | 0.403 | |
| C/G‐C/C | 114 | 110 | 1.19 (0.80–1.77) | |||
| Recessive | G/G‐G/C | 160 | 185 | 1.00 | 0.004 | |
| C/C | 34 | 16 | 2.55 (1.35–4.81) | |||
| Log‐additive | — | — | — | 1.36 (1.01–1.82) | 0.042 |
Abbreviations: SNP, single nucleotide polymorphism; OR odds ratio; CI, confidence interval.
p value adjusted for age was calculated by logistic regression.
p < 0.05 indicates statistical significance.
The association of genotypes in RETN and LDLR genes with the clinical phenotypes
| Gene | SNP | genotype | Hip lesions |
| Clinical stages |
| |||
|---|---|---|---|---|---|---|---|---|---|
| Unilateral | Bilateral | Stage II | Stage III | Stage IV | |||||
|
| rs7408174 | CC | 5 | 8 | 0.268 | 2 | 7 | 4 | 0.884 |
| CT | 19 | 64 | 22 | 36 | 25 | ||||
| TT | 20 | 85 | 30 | 46 | 29 | ||||
| rs34861192 | AA | 0 | 3 | 0.436 | 1 | 2 | 0 | 0.698 | |
| AG | 8 | 39 | 14 | 18 | 15 | ||||
| GG | 34 | 112 | 38 | 68 | 40 | ||||
| rs3219175 | AA | 0 | 3 | 0.543 | 1 | 2 | 0 | 0.489 | |
| AG | 10 | 42 | 14 | 19 | 19 | ||||
| GG | 34 | 112 | 39 | 68 | 39 | ||||
| rs3745367 | AA | 3 | 23 | 0.217 | 7 | 11 | 8 | 0.338 | |
| AG | 20 | 78 | 32 | 38 | 28 | ||||
| GG | 21 | 56 | 15 | 40 | 22 | ||||
| rs3745368 | AA | 3 | 4 | 0.396 | 5 | 1 | 1 | 0.022 | |
| AG | 12 | 43 | 10 | 31 | 14 | ||||
| GG | 29 | 109 | 39 | 56 | 43 | ||||
| rs3745369 | CC | 5 | 29 | 0.547 | 10 | 14 | 10 | 0.976 | |
| CG | 19 | 61 | 20 | 35 | 25 | ||||
| GG | 18 | 62 | 22 | 36 | 22 | ||||
| rs1477341 | AA | 14 | 40 | 0.243 | 13 | 21 | 20 | 0.125 | |
| AT | 15 | 76 | 31 | 39 | 21 | ||||
| TT | 12 | 32 | 7 | 21 | 16 | ||||
|
| rs12611067 | GG | 20 | 68 | 0.739 | 27 | 40 | 21 | 0.306 |
| TG | 19 | 72 | 19 | 41 | 31 | ||||
| TT | 5 | 12 | 6 | 5 | 6 | ||||
| rs14158 | AA | 9 | 20 | 0.409 | 9 | 8 | 12 | 0.158 | |
| AG | 20 | 83 | 23 | 49 | 31 | ||||
| GG | 15 | 54 | 22 | 32 | 15 | ||||
| rs2738464 | CC | 27 | 72 | 0.19 | 28 | 40 | 31 | 0.784 | |
| GC | 14 | 71 | 23 | 38 | 24 | ||||
| GG | 2 | 10 | 3 | 7 | 2 | ||||
| rs2738465 | AA | 13 | 37 | 0.489 | 15 | 18 | 17 | 0.621 | |
| GA | 24 | 83 | 26 | 50 | 31 | ||||
| GG | 7 | 37 | 13 | 21 | 10 | ||||
Reference Sequence and version number (RETN: NG_023447.1; LDLR: NG_009060.1).
p value was calculated by Chi‐squared test.
p < 0.05 indicates statistical significance.
Comparison of lipids levels between each genotype
| SNP | TC (mmol/L) | TG (mmol/L) | HDL‐C (mmol/L) | LDL‐C (mmol/L) | TC/HDL‐C | TG/HDL‐C | LDL‐C/HDL‐C |
|---|---|---|---|---|---|---|---|
| rs7408174 | |||||||
| CC ( | 4.49 ± 0.88 | 1.76 ± 0.89 | 1.02 ± 0.26 | 2.66 ± 0.87 | 4.52 ± 0.85 | 1.88 ± 1.12 | 2.61 ± 0.74 |
| CT ( | 4.66 ± 0.95 | 2.07 ± 1.60 | 1.03 ± 0.22 | 2.75 ± 0.94 | 4.64 ± 1.08 | 2.19 ± 1.99 | 2.74 ± 0.90 |
| TT ( | 4.66 ± 0.91 | 1.77 ± 1.01 | 1.06 ± 0.25 | 2.72 ± 0.78 | 4.61 ± 1.25 | 1.82 ± 1.21 | 2.68 ± 0.85 |
|
| 0.821 | 0.247 | 0.688 | 0.923 | 0.934 | 0.289 | 0.828 |
| rs34861192 | |||||||
| AA ( | 4.68 ± 0.48 | 1.37 ± 0.42 | 1.08 ± 0.14 | 2.30 ± 0.85 | 4.36 ± 0.23 | 1.32 ± 0.56 | 2.22 ± 1.01 |
| AG ( | 4.67 ± 1.02 | 2.02 ± 1.73 | 1.07 ± 0.26 | 2.78 ± 0.91 | 4.52 ± 1.25 | 2.08 ± 2.08 | 2.67 ± 0.92 |
| GG ( | 4.65 ± 0.91 | 1.86 ± 1.12 | 1.04 ± 0.23 | 2.73 ± 0.84 | 4.64 ± 1.14 | 1.94 ± 1.38 | 2.72 ± 0.85 |
|
| 0.992 | 0.59 | 0.619 | 0.627 | 0.765 | 0.68 | 0.589 |
| rs3219175 | |||||||
| AA ( | 4.68 ± 0.48 | 1.37 ± 0.42 | 1.08 ± 0.14 | 2.30 ± 0.85 | 4.36 ± 0.23 | 1.32 ± 0.56 | 2.22 ± 1.01 |
| AG ( | 4.68 ± 1.00 | 1.96 ± 1.59 | 1.07 ± 0.26 | 2.74 ± 0.89 | 4.58 ± 1.26 | 2.01 ± 1.89 | 2.65 ± 0.89 |
| GG ( | 4.64 ± 0.90 | 1.88 ± 1.17 | 1.04 ± 0.23 | 2.73 ± 0.84 | 4.63 ± 1.13 | 1.98 ± 1.47 | 2.73 ± 0.85 |
|
| 0.952 | 0.718 | 0.720 | 0.677 | 0.886 | 0.760 | 0.546 |
| rs3745368 | |||||||
| AA ( | 4.53 ± 1.00 | 1.46 ± 0.73 | 1.02 ± 0.40 | 2.67 ± 0.89 | 4.85 ± 1.47 | 1.72 ± 1.31 | 2.79 ± 0.79 |
| AG ( | 4.51 ± 0.81 | 1.74 ± 1.09 | 1.03 ± 0.18 | 2.70 ± 0.82 | 4.50 ± 1.02 | 1.81 ± 1.30 | 2.67 ± 0.76 |
| GG ( | 4.72 ± 0.96 | 1.97 ± 1.37 | 1.05 ± 0.25 | 2.75 ± 0.87 | 4.65 ± 1.19 | 2.05 ± 1.69 | 2.70 ± 0.91 |
|
| 0.326 | 0.355 | 0.727 | 0.940 | 0.628 | 0.578 | 0.931 |
| rs3745369 | |||||||
| CC ( | 4.53 ± 0.68 | 1.60 ± 0.87 | 1.04 ± 0.26 | 2.74 ± 0.63 | 4.56 ± 1.08 | 1.68 ± 1.03 | 2.74 ± 0.71 |
| CG ( | 4.58 ± 1.00 | 1.96 ± 1.30 | 1.02 ± 0.22 | 2.65 ± 0.89 | 4.61 ± 1.17 | 2.09 ± 1.66 | 2.64 ± 0.83 |
| GG ( | 4.76 ± 0.94 | 1.84 ± 1.20 | 1.07 ± 0.25 | 2.77 ± 0.92 | 4.64 ± 1.20 | 1.90 ± 1.42 | 2.72 ± 0.96 |
|
| 0.364 | 0.345 | 0.548 | 0.662 | 0.942 | 0.366 | 0.798 |
Abbreviations: TC, total cholesterol; TG, triglycerides; LDL‐C, low‐density lipoprotein‐cholesterol; LDL‐C, high‐density lipoprotein‐cholesterol.
Figure 1Haplotype block map for the seven SNPs in the RETN gene. Block 1 includes rs34861192 and rs3219175
Figure 2Haplotype block map for the four SNPs in the LDLR gene. Block 1 includes rs14158, rs2738464, and rs2738465
GTEx results for three SNPs in genes expression in the most relevant tissue
| SNP | Gene | Effect |
| Tissue |
|---|---|---|---|---|
| rs34861192 |
| 1.00 | 4.00E‐14 | Whole‐Blood |
| rs34861192 |
| 1.00 | 6.40E‐08 | Muscle‐Skeletal |
| rs3219175 |
| 0.84 | 1.60E‐14 | Whole‐Blood |
| rs3219175 |
| 1.00 | 1.90E‐09 | Muscle‐Skeletal |
| rs2738464 |
| −0.26 | 3.40E‐05 | Muscle‐Skeletal |