| Literature DB >> 31206249 |
Silvia Vidal1,2, Ainhoa Pascual-Alonso1,2, Marc Rabaza-Gairí1,2, Edgar Gerotina1,2, Nuria Brandi3, Paola Pacheco4, Clara Xiol1,2, Mercè Pineda1, Judith Armstrong2,4,5.
Abstract
BACKGROUND: Rett syndrome (RTT) is a developmental disorder with an early onset and X-linked dominant inheritance pattern. It is first recognized in infancy and is seen almost always in girls, but it may be seen in boys on rare occasions. Typical RTT is caused by de novo mutations of the gene MECP2 (OMIM*300005), and atypical forms of RTT can be caused by mutations of the CDKL5 (OMIM*300203) and FOXG1 (OMIM*164874) genes.Entities:
Keywords: zzm321990MECP2zzm321990; Phenotype-genotype correlations; Rett syndrome; large deletions
Mesh:
Substances:
Year: 2019 PMID: 31206249 PMCID: PMC6687651 DOI: 10.1002/mgg3.793
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
All the collected data from the patients; genomic information is based on the GRCh38/hg38 and the accession number NM_004992.3 (NG_007107.2) for MECP2 gene
| Patient ID | Clinical phenotype | Clinical severity score | Age of scoring, yr. |
| Breakpoint | Deletion Size | ICX |
|---|---|---|---|---|---|---|---|
| P1 | Classic | 8 | 11 | 4 | c.1153_2387del | 1,235 bp | 72:28 |
| P2 | Classic | NA | NA | 4 | c.1157_3664del | 2,508 bp | 88:22 |
| P3 | Classic | 11 | 10 | 4 | c.1041_4447del | 3,407 bp | 64:36 |
| P4 | Classic | 10 | 17 | 4 | c.1164_4665del | 3,502 bp | 87:13 |
| P5 | Classic | 15 | 2 | 4 | c.1164_1461+3282del | 3,580 bp | 58:42 |
| P6 | Classic | NA | NA | 3 and 4 | c.27‐1125_1146del | 3,001 bp | 55:45 |
| P7 | Classic | NA | NA | 3 and 4 | c.27‐5834_1166del | 7,720 bp | 58:42 |
| P8 | Classic | NA | NA | 3 and 4 | c.27‐10677_1192del | 12,599 bp | 88:12 |
| P9 | Classic | NA | NA | 3 and 4 | c.(26+1_27‐1)_(378_1385)del | ≈ 11.5 kb | 82:18 |
| P10 | Classic | 17 | 10 | 3 and 4 | c.27‐7985_1209del | 9,924 bp | 51:49 |
| P11 | Classic | 10 | 6 | 3 and 4 | c.27‐2950_1170del | 4,850 bp | 62:38 |
| P12 | Classic | 13 | 6 | 3 and 4 | c.27‐6312_1301delinsTG | 8,343 bp | 68:32 |
| P13 | Classic | 14 | 4 | 3 and 4 | c.(26+1_27‐1)_(989_1241)del | ≈19.15 kb | 74:26 |
| P14 | Classic | NA | NA | 3 and 4 | c.27−15131_1461 + 7939del;insGGATCAGGT | 25,261 bp | 76:24 |
| P15 | Classic | 13 | 8 | 3 and 4 | c.(26+1_27‐1)_(1461+4313_1461+5337)del | ≈22.5 kb | 83:17 |
| P16 | Classic | 14 | 3 | 3, 4 and | g.(154092184_154032557)_(154000172_153997133)del | ≈ 50.7 kb | 94:6 |
| P17 | Classic | 10 | 10 | 3, 4 and | g.(154092184_154032557)_(153986984_153969656)del | ≈ 77.9 kb | 88:12 |
| P18 | Classic | 15 | 21 | 3, 4 and | g.(154092184_154032557)_(154021813_154018990)del | ≈ 28.3 kb | 64:36 |
| P19 | Classic | 15 | 16 | 3, 4 and | c.[27‐16409_1201delinsGGGGGCC; 1202_1460+2170inv; 1460+2171_1460+12766delinsTCTGCACGGGG] | 18339bp and 10596bp | 97:03 |
| P20 | Classic | 14 | NA | 4 and | g.154030942_154003453del | 27,589 bp | 74:26 |
| P21 | Classic | 17 | NA | 1 and 2 | g.(154128954_154097731)_(154092184_154032557)del | ≈ 85 kb | 73:27 |
Abbreviation: NA, not available.
Indicates the lack of information for some of the clinical features (See Supplementary Data S4); so the given score is the result of the data we were given by the clinicians.
Figure 1Position of the deletions in MECP2. Note that there are two regions prone to harbor a breakpoint. The black line indicates the region known with certainty to be deleted; the red line designates the region where only qPCR information is available
Figure 2Phenotype–genotype correlation according to the deleted region. The left side corresponds to the correlation based on our patients. The right side shows the same correlation based on our patients and the ones reported by Hardwick et al. (2007)