Literature DB >> 31203421

Why imaging data alone is not enough: AI-based integration of imaging, omics, and clinical data.

Andreas Holzinger1, Benjamin Haibe-Kains2,3, Igor Jurisica4,5,6.   

Abstract

Artificial intelligence (AI) is currently regaining enormous interest due to the success of machine learning (ML), and in particular deep learning (DL). Image analysis, and thus radiomics, strongly benefits from this research. However, effectively and efficiently integrating diverse clinical, imaging, and molecular profile data is necessary to understand complex diseases, and to achieve accurate diagnosis in order to provide the best possible treatment. In addition to the need for sufficient computing resources, suitable algorithms, models, and data infrastructure, three important aspects are often neglected: (1) the need for multiple independent, sufficiently large and, above all, high-quality data sets; (2) the need for domain knowledge and ontologies; and (3) the requirement for multiple networks that provide relevant relationships among biological entities. While one will always get results out of high-dimensional data, all three aspects are essential to provide robust training and validation of ML models, to provide explainable hypotheses and results, and to achieve the necessary trust in AI and confidence for clinical applications.

Entities:  

Keywords:  Artificial intelligence; Decision support; Integrative computational biology; Machine learning; Network-based analysis; Precision medicine; Radiomics

Year:  2019        PMID: 31203421     DOI: 10.1007/s00259-019-04382-9

Source DB:  PubMed          Journal:  Eur J Nucl Med Mol Imaging        ISSN: 1619-7070            Impact factor:   9.236


  63 in total

1.  Functional topology in a network of protein interactions.

Authors:  N Przulj; D A Wigle; I Jurisica
Journal:  Bioinformatics       Date:  2004-02-12       Impact factor: 6.937

2.  Mastering the game of Go with deep neural networks and tree search.

Authors:  David Silver; Aja Huang; Chris J Maddison; Arthur Guez; Laurent Sifre; George van den Driessche; Julian Schrittwieser; Ioannis Antonoglou; Veda Panneershelvam; Marc Lanctot; Sander Dieleman; Dominik Grewe; John Nham; Nal Kalchbrenner; Ilya Sutskever; Timothy Lillicrap; Madeleine Leach; Koray Kavukcuoglu; Thore Graepel; Demis Hassabis
Journal:  Nature       Date:  2016-01-28       Impact factor: 49.962

3.  Robustness and Reproducibility of Radiomics in Magnetic Resonance Imaging: A Phantom Study.

Authors:  Bettina Baeßler; Kilian Weiss; Daniel Pinto Dos Santos
Journal:  Invest Radiol       Date:  2019-04       Impact factor: 6.016

4.  Case Not Closed: Prescription Errors 12 Years after Computerized Physician Order Entry Implementation.

Authors:  Gili Kadmon; Michal Pinchover; Avichai Weissbach; Shirley Kogan Hazan; Elhanan Nahum
Journal:  J Pediatr       Date:  2017-11       Impact factor: 4.406

Review 5.  Deep Learning: A Primer for Radiologists.

Authors:  Gabriel Chartrand; Phillip M Cheng; Eugene Vorontsov; Michal Drozdzal; Simon Turcotte; Christopher J Pal; Samuel Kadoury; An Tang
Journal:  Radiographics       Date:  2017 Nov-Dec       Impact factor: 5.333

Review 6.  Emerging Molecular Imaging Techniques in Gynecologic Oncology.

Authors:  Gigin Lin; Chyong-Huey Lai; Tzu-Chen Yen
Journal:  PET Clin       Date:  2018-01-10

7.  A novel representation of inter-site tumour heterogeneity from pre-treatment computed tomography textures classifies ovarian cancers by clinical outcome.

Authors:  Hebert Alberto Vargas; Harini Veeraraghavan; Maura Micco; Stephanie Nougaret; Yulia Lakhman; Andreas A Meier; Ramon Sosa; Robert A Soslow; Douglas A Levine; Britta Weigelt; Carol Aghajanian; Hedvig Hricak; Joseph Deasy; Alexandra Snyder; Evis Sala
Journal:  Eur Radiol       Date:  2017-03-13       Impact factor: 5.315

8.  Reproducibility of computational workflows is automated using continuous analysis.

Authors:  Brett K Beaulieu-Jones; Casey S Greene
Journal:  Nat Biotechnol       Date:  2017-03-13       Impact factor: 54.908

9.  Harnessing Connectivity in a Large-Scale Small-Molecule Sensitivity Dataset.

Authors:  Brinton Seashore-Ludlow; Matthew G Rees; Jaime H Cheah; Murat Cokol; Edmund V Price; Matthew E Coletti; Victor Jones; Nicole E Bodycombe; Christian K Soule; Joshua Gould; Benjamin Alexander; Ava Li; Philip Montgomery; Mathias J Wawer; Nurdan Kuru; Joanne D Kotz; C Suk-Yee Hon; Benito Munoz; Ted Liefeld; Vlado Dančík; Joshua A Bittker; Michelle Palmer; James E Bradner; Alykhan F Shamji; Paul A Clemons; Stuart L Schreiber
Journal:  Cancer Discov       Date:  2015-10-19       Impact factor: 39.397

10.  Systems Biology, Neuroimaging, Neuropsychology, Neuroconnectivity and Traumatic Brain Injury.

Authors:  Erin D Bigler
Journal:  Front Syst Neurosci       Date:  2016-08-09
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  14 in total

1.  EJNMMI supplement: bringing AI and radiomics to nuclear medicine.

Authors:  Patrick Veit-Haibach; Irène Buvat; Ken Herrmann
Journal:  Eur J Nucl Med Mol Imaging       Date:  2019-12       Impact factor: 9.236

2.  From Hume to Wuhan: An Epistemological Journey on the Problem of Induction in COVID-19 Machine Learning Models and its Impact Upon Medical Research.

Authors:  Carlos Vega
Journal:  IEEE Access       Date:  2021-07-06       Impact factor: 3.367

3.  Multi-omics disease module detection with an explainable Greedy Decision Forest.

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Journal:  Sci Rep       Date:  2022-10-07       Impact factor: 4.996

4.  MRI radiomic features-based machine learning approach to classify ischemic stroke onset time.

Authors:  Yi-Qun Zhang; Ao-Fei Liu; Feng-Yuan Man; Ying-Ying Zhang; Chen Li; Yun-E Liu; Ji Zhou; Ai-Ping Zhang; Yang-Dong Zhang; Jin Lv; Wei-Jian Jiang
Journal:  J Neurol       Date:  2021-07-04       Impact factor: 4.849

5.  Artificial Intelligence and Radiomics in Head and Neck Cancer Care: Opportunities, Mechanics, and Challenges.

Authors:  Lisanne V van Dijk; Clifton D Fuller
Journal:  Am Soc Clin Oncol Educ Book       Date:  2021-03

6.  Exploratory study on classification of diabetes mellitus through a combined Random Forest Classifier.

Authors:  Xuchun Wang; Mengmeng Zhai; Zeping Ren; Hao Ren; Meichen Li; Dichen Quan; Limin Chen; Lixia Qiu
Journal:  BMC Med Inform Decis Mak       Date:  2021-03-20       Impact factor: 2.796

7.  GENERATOR Breast DataMart-The Novel Breast Cancer Data Discovery System for Research and Monitoring: Preliminary Results and Future Perspectives.

Authors:  Fabio Marazzi; Luca Tagliaferri; Valeria Masiello; Francesca Moschella; Giuseppe Ferdinando Colloca; Barbara Corvari; Alejandro Martin Sanchez; Nikola Dino Capocchiano; Roberta Pastorino; Chiara Iacomini; Jacopo Lenkowicz; Carlotta Masciocchi; Stefano Patarnello; Gianluca Franceschini; Maria Antonietta Gambacorta; Riccardo Masetti; Vincenzo Valentini
Journal:  J Pers Med       Date:  2021-01-22

Review 8.  Artificial intelligence and hybrid imaging: the best match for personalized medicine in oncology.

Authors:  Martina Sollini; Francesco Bartoli; Andrea Marciano; Roberta Zanca; Riemer H J A Slart; Paola A Erba
Journal:  Eur J Hybrid Imaging       Date:  2020-12-09

9.  Open Data for Differential Network Analysis in Glioma.

Authors:  Claire Jean-Quartier; Fleur Jeanquartier; Andreas Holzinger
Journal:  Int J Mol Sci       Date:  2020-01-15       Impact factor: 5.923

Review 10.  Application of radiomics and machine learning in head and neck cancers.

Authors:  Zhouying Peng; Yumin Wang; Yaxuan Wang; Sijie Jiang; Ruohao Fan; Hua Zhang; Weihong Jiang
Journal:  Int J Biol Sci       Date:  2021-01-01       Impact factor: 6.580

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