| Literature DB >> 31198638 |
Susan J Dykes1,2, Varsha C Pilbrow3.
Abstract
Worn teeth pose a major limitation to researchers in the fields of extinct and extant hominoid systematics because they lack clearly identifiable anatomical landmarks needed to take measurements on the crown enamel surface and are typically discarded from a study. This is particularly detrimental when sample sizes for some groups are already characteristically low, if there is an imbalance between samples representing populations, sexes or dietary strategies, or if the worn teeth in question are type specimens of fossil species or other key specimens. This study proposes a methodology based predominantly on mathematically-derived landmarks for measuring size and shape features of molars, irrespective of wear. With 110 specimens of lower second molars from five species of extant hominoids (Pan troglodytes, P. paniscus, Gorilla gorilla, G. beringei, Homo sapiens), n ≥ 20 per species, n ≥ 10 per subspecies, good species separation in morphospace is achieved in a principal components analysis. Classification accuracy in a discriminant function analysis is 96.4% at the species level and 88.2% at the subspecies level (92.7% and 79.1%, respectively, on cross-validation). The classification accuracy compares favorably to that achieved by anatomically-derived measurements based on published research (94% and 84% at the species and subspecies level respectively; 91% and 76% on cross-validation). The mathematical landmarking methodology is rapid and uncomplicated. The results support the use of mathematical landmarks to enable the inclusion of worn molar teeth in dental studies so as to maximize sample sizes and restore balance between populations and/or sexes in hominoid systematic studies.Entities:
Keywords: Dental morphometrics; Geometric morphometrics; Landmarks; Systematics; Taxonomy; Worn teeth
Year: 2019 PMID: 31198638 PMCID: PMC6535218 DOI: 10.7717/peerj.6990
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Summary of images of 110 LM2s used in the study.
| Species/subspecies | Population name/geographical area | Number/Sex | Collections used |
|---|---|---|---|
| Virunga; Kayonza | RG; USNM; BMNH | ||
| Utu; Mweng-Fizi; Tshiaberimu | RG | ||
| Coastal Cameroon; Coastal Gabon; Southern Gabon, Congo; Sangha River; Upper reaches of Sangha and Sanaga Rivers; Inland Cameroon | ZMB; BMNH; Z; PCM; USNM; RG; MCZ | ||
| Between Gambia and Cavally; between Cavally and Volta | RG; USNM; PM; AMNH | ||
| South Sanaga River; Sanaga River, inland of coast; Southern Gabon | Z; PCM; MCZ; RG; ZMB | ||
| Between Ubangi and Congo-Lisala; Uele River; Kisangani district; Lake Albert to north of Lake Tanganyika; Lake Kivu and Lake Tanganyika | RG; MBNH; ZMB; | ||
| Between Congo and Lukenie; between Lomami and Congo; between Lukeni and Kasai | RG; MCZ | ||
| Southern African KhoeSan (hunter-gatherer); Kenya - Babinga (hunter-gatherer); Kenya - Teita (subsistence farming); Australian Aboriginal (hunter-gatherer); Melanesia (horticulturalists); South Asia (predominantly agriculturalists); Balkan region (predominantly agriculturalists); Near East (predominantly agriculturalists); Western Europe (predominantly agriculturalists) | Iziko; Dart |
Notes.
Museum/collections are as follows: AMNH, American Museum of Natural History, New York; BMNH, British Museum of Natural History, London; CAM-DL, Duckworth Collection, Cambridge University; Dart, Raymond Dart Collection, Anatomical Sciences, University of the Witwatersrand, Johannesburg; Iziko, Iziko Museum, Cape Town; MNHN, Muséum National d’Histoire Naturelle, Paris (Musée de l’Homme) ; PCM, Powell-Cotton Museum, Kent ; RG, Musée Royal de L’Afrique Centrale, Tervuren, Belgium; USNM, United States National Museum, Washington, D.C.; Z, Anthropologisches Institüt und Museum der Universität Zürich-Irchel, Zürich; ZMB, Zoologisches Museum, Berlin.
Pilbrow (2006); Pilbrow (2010)
University of the Witwatersrand, Johannesburg, Blanket Ethics Waiver Number W-CJ-14064-1.
Figure 1Landmarks sited on a Pan troglodytes lower second molar (RG, Tervuren, #29075).
Description of landmark sites.
| # | Type | Description |
|---|---|---|
| 1 | III | Mathematical center of bounding box |
| 2 | III | Mesial-most extent of the molar, placed midway down the mesial side of the bounding box |
| 3 | III | Lingual-most extent of the molar, placed midway across the lingual side of the bounding box |
| 4 | III | Distal-most extent of the molar, placed midway down the distal side of the bounding box |
| 5 | III | Buccal-most extent of the molar, placed midway across the buccal side of the bounding box |
| 6 | I | Anatomical landmark at the groove between the metaconid and protoconid on the perimeter of the crown (corrected for interstitial wear). |
| 7 | I | Anatomical landmark at the groove between the metaconid and entoconid on the perimeter of the crown. |
| 8 | I | Anatomical landmark at the groove between the protoconid and hypoconulid on the perimeter of the crown. |
| 9 | I | Anatomical landmark at the groove between the hypoconulid and hypoconid on the perimeter of the crown. |
| 10 | I | Anatomical landmark at the groove between the hypoconid and protoconid on the perimeter of the crown. |
| 11 | III | Midpoint of the line between landmarks 6 and 7. |
| 12 | III | Midpoint of the line between landmarks 7 and 8. |
| 13 | III | Midpoint of the line between landmarks 8 and 9. |
| 14 | III | Midpoint of the line between landmarks 9 and 10. |
| 15 | III | Midpoint of the line between landmarks 10 and 6. |
| 16 | III | Midpoint of the arc/curve at the perimeter of the metaconid created by extending a straight line from landmark 1 through landmark 11 to the perimeter. |
| 17 | III | Midpoint of the arc at the perimeter of the entoconid created by extending a straight line from landmark 1 through landmark 12 to the perimeter. |
| 18 | III | Midpoint of the arc at the perimeter of the hypoconulid created by extending a straight line from landmark 1 through landmark 13 to the perimeter. |
| 19 | III | Midpoint of the arc at the perimeter of the hypoconid created by extending a straight line from landmark 1 through landmark 14 to the perimeter. |
| 20 | III | Midpoint of the arc at the perimeter of the protoconid created by extending a straight line from landmark 1 through landmark 15 to the perimeter. |
| 21 | III | Mathematically-derived proxy for the center point of the metaconid, placed at the midpoint of the line from landmark 1 to landmark 16 |
| 22 | III | Mathematically-derived proxy for the center point of the entoconid, placed at the midpoint of the line from landmark 1 to landmark 17 |
| 23 | III | Mathematically-derived proxy for the center point of the hypoconulid, placed at the midpoint of the line from landmark 1 to landmark 18 |
| 24 | III | Mathematically-derived proxy for the center point of the hypoconid, placed at the midpoint of the line from landmark 1 to landmark 19 |
| 25 | III | Mathematically-derived proxy for the center point of the protoconid, placed at the midpoint of the line from landmark 1 to landmark 20 |
| 26 | III | Point on the lingual edge of metaconid placed by extending a line from the center point of metaconid to the lingual edge of the tooth. |
| 27 | III | Point on the lingual edge of entoconid placed by extending a straight line from the center point of entoconid to the lingual edge of the tooth. |
| 28 | III | Point on the buccal edge of hypoconid placed by extending a straight line from the center point of hypoconid to the buccal edge of the tooth. |
| 29 | III | Point on the buccal edge of protoconid placed by extending a straight line from the center point of protoconid to the buccal edge of the crown. |
Figure 2Landmarks on H. sapiens LM2 with four cusps.
Figure 3Homo sapiens LM2 with six cusps.
Figure 4Raw distances (A) and angles (B) for use in DFA analyses.
List of mathematically-derived measurements used for input into discriminant function analyses in this study.
| # | Measurement | Description |
|---|---|---|
| 1 | Mesiodistal (MD) diameter | Between landmarks 2 and 4 |
| 2 | Buccolingual breadth across mesial cusps | Between landmarks 26 and 29 |
| 3 | Buccolingual breadth across distal cusps | Between landmarks 27 and 28 |
| 4 | Breadth across buccolingual groove | Between landmarks 7 and 10 |
| 5 | Length of mesial edge of buccal development groove | Between landmarks 29 and 10 |
| 6 | Length of distal edge of buccal development groove | Between landmarks 10 and 28 |
| 7 | Angle of mesial cusps | Angle between line connecting centers of mesial cusps (landmarks 21 and 25) and the MD diameter (line between landmarks 2 and 4) |
| 8 | Angle of distal cusps | Angle between line connecting centers of distal cusps (landmarks 22 and 24) and the MD diameter (line between landmarks 2 and 4) |
| 9 | Hypoconulid curvature ratio | The extent of the outward projection of the of the arc of the hypoconulid at the perimeter, in relation to the total length between the tooth center and the midpoint of the hypoconulid at the perimeter, to measure flatness or curvature of the hypoconulid (landmarks 13 –18, divided by landmarks 1–18) |
Figure 5Principal Components analysis in shapespace (shape only) of 5 extant hominoid species.
Legend: open circles, Gorilla gorilla; closed diamonds, G. b. beringei; X-crosses, G. b. graueri; T, Pan troglodytes troglodytes; S, P. t. schweinfurthii; V, P. t. verus; Targets, P. paniscus; Stars, H. sapiens. Red symbols denote females, blue symbols denote males. All wireframes depict molars with the mesial edge to the left, the distal edge to the right, the lingual edge to the top and the buccal edge to the bottom.
Figure 6Principal Components analysis in formspace (shape-versus-size) of 5 extant hominoid species.
Legend: open circles, Gorilla gorilla; closed diamonds, G. b. beringei; X-crosses, G. b. graueri; T, Pan troglodytes troglodytes; S, P. t. schweinfurthii; V, P. t. verus; Targets, P. paniscus; Stars, H. sapiens. Red symbols denote females, blue symbols denote males. All wireframes depict molars with the mesial edge to the left, the distal edge to the right, the lingual edge to the top and the buccal edge to the bottom.
Classification accuracy of 110 LM2s at species level using mathematically-derived measurements.
| Species | |||||||
|---|---|---|---|---|---|---|---|
| Original | 18 | 2 | 0 | 0 | 0 | 20 | |
| 1 | 19 | 0 | 0 | 0 | 20 | ||
| 0 | 0 | 29 | 1 | 0 | 30 | ||
| 0 | 0 | 0 | 20 | 0 | 20 | ||
| 0 | 0 | 0 | 0 | 20 | 20 | ||
| Cross-validated | 17 | 3 | 0 | 0 | 0 | 20 | |
| 2 | 18 | 0 | 0 | 0 | 20 | ||
| 0 | 0 | 29 | 1 | 0 | 30 | ||
| 0 | 0 | 1 | 19 | 0 | 20 | ||
| 0 | 0 | 0 | 1 | 19 | 20 | ||
| 96.4% of original grouped cases correctly classified. | |||||||
| 92.7% of cross-validated grouped cases correctly classified. | |||||||
Classification accuracy of 110 LM2s at subspecies level using mathematically-derived measurements.
| Subspecies | N | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Original | 8 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 10 | |
| 2 | 7 | 1 | 0 | 0 | 0 | 0 | 0 | 10 | ||
| 1 | 1 | 18 | 0 | 0 | 0 | 0 | 0 | 20 | ||
| 0 | 0 | 0 | 9 | 1 | 0 | 0 | 0 | 10 | ||
| 0 | 0 | 0 | 0 | 8 | 1 | 1 | 0 | 10 | ||
| 0 | 0 | 0 | 0 | 2 | 8 | 0 | 0 | 10 | ||
| 0 | 0 | 0 | 0 | 1 | 0 | 19 | 0 | 20 | ||
| 0 | 0 | 0 | 0 | 0 | 0 | 0 | 20 | 20 | ||
| Cross-validated | 6 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 10 | |
| 3 | 6 | 1 | 0 | 0 | 0 | 0 | 0 | 10 | ||
| 1 | 1 | 18 | 0 | 0 | 0 | 0 | 0 | 20 | ||
| 0 | 0 | 0 | 9 | 1 | 0 | 0 | 0 | 10 | ||
| 0 | 0 | 0 | 0 | 7 | 2 | 1 | 0 | 10 | ||
| 0 | 0 | 0 | 1 | 4 | 5 | 0 | 0 | 10 | ||
| 0 | 0 | 0 | 0 | 1 | 0 | 19 | 0 | 20 | ||
| 0 | 0 | 0 | 2 | 1 | 0 | 0 | 17 | 20 | ||
| 88.2% of original grouped cases correctly classified. | ||||||||||
| 79.1% of cross-validated grouped cases correctly classified. | ||||||||||
Classification accuracy of 110 LM2s at species level using anatomically-derived measurements.
| Species | |||||||
|---|---|---|---|---|---|---|---|
| Original | 17 | 3 | 0 | 0 | 0 | 20 | |
| 3 | 17 | 0 | 0 | 0 | 20 | ||
| 0 | 0 | 30 | 0 | 0 | 30 | ||
| 0 | 0 | 0 | 19 | 1 | 20 | ||
| 0 | 0 | 0 | 1 | 19 | 20 | ||
| Cross-validated | 15 | 5 | 0 | 0 | 0 | 20 | |
| 3 | 17 | 0 | 0 | 0 | 20 | ||
| 0 | 0 | 0 | 30 | 0 | 30 | ||
| 0 | 0 | 0 | 19 | 1 | 20 | ||
| 0 | 0 | 0 | 1 | 19 | 20 | ||
| 93.6% of original grouped cases correctly classified. | |||||||
| 90.9% of cross-validated grouped cases correctly classified. | |||||||
Classification accuracy of 110 LM2s at subspecies level using anatomically-derived measurements.
| Subspecies | N | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Original | 5 | 3 | 2 | 0 | 0 | 0 | 0 | 0 | 10 | |
| 2 | 7 | 1 | 0 | 0 | 0 | 0 | 0 | 10 | ||
| 2 | 1 | 17 | 0 | 0 | 0 | 0 | 0 | 20 | ||
| 0 | 0 | 0 | 10 | 0 | 0 | 0 | 0 | 10 | ||
| 0 | 0 | 0 | 1 | 8 | 1 | 0 | 0 | 10 | ||
| 0 | 0 | 0 | 1 | 3 | 6 | 0 | 0 | 10 | ||
| 0 | 0 | 0 | 0 | 0 | 0 | 19 | 1 | 20 | ||
| 0 | 0 | 0 | 0 | 0 | 0 | 0 | 20 | 20 | ||
| Cross-validated | 4 | 4 | 2 | 0 | 0 | 0 | 0 | 0 | 10 | |
| 3 | 6 | 1 | 0 | 0 | 0 | 0 | 0 | 10 | ||
| 3 | 1 | 16 | 0 | 0 | 0 | 0 | 0 | 20 | ||
| 0 | 0 | 0 | 9 | 0 | 1 | 0 | 0 | 10 | ||
| 0 | 0 | 0 | 2 | 6 | 2 | 0 | 0 | 10 | ||
| 0 | 0 | 0 | 1 | 4 | 5 | 0 | 0 | 10 | ||
| 0 | 0 | 0 | 0 | 0 | 0 | 19 | 1 | 20 | ||
| 0 | 0 | 0 | 0 | 0 | 0 | 1 | 19 | 20 | ||
| 83.6% of original grouped cases correctly classified. | ||||||||||
| 76.4% of cross-validated grouped cases correctly classified. | ||||||||||
Figure 7Convex hull plots of sample of 25 specimens chosen to match the species-subspecies groups used by Skinner et al. (2009).