| Literature DB >> 31197084 |
Zhicheng Huang1, Xiaoyu Lei2, Xi Feng3, Shuangshuang Gao4, Gangzheng Wang5, Yinbing Bian6, Wen Huang7, Ying Liu8.
Abstract
Volatile organosulfur compounds are the main components that contribute to the unique aroma of dried Lentinula edodes. They are mainly generated during the hot-air drying process, and cysteine desulfurase is the key enzyme in this process. Temperature may be an essential factor of volatile organosulfur compound production by influencing the expression of the cysteine desulfurase gene. In this study, the promoter sequence of the cysteine desulfurase gene (pCS) was cloned and analyzed using bioinformatics tools. A series of 5'deletion fragments and site-directed mutations of pCS were constructed to identify the element that responds to heat stress. Six heat shock transcription factor (HSTF) binding sites were predicted by SCPD (The Promoter Database of Saccharomyces cerevisiae) and three of the binding sites were predicted by Yeastract (Yeast Search for Transcriptional Regulators and Consensus Tracking) in pCS. The results indicated that pCS was able to drive the expression of the EGFP (Enhanced Green Fluorescent Protein) gene in L. edodes. Moreover, the fluorescence intensity increased after heat stress. The changes in fluorescence intensity of different 5'deletion fragments showed that the heat response region was located between -500 bp and -400 bp in pCS. The site-directed mutation analysis further showed that the heat-inducible element was between -490 bp and -500 bp (TTTCTAGAAT) in pCS. Our results provide molecular insight for studying the formation of volatile organosulfur compounds in dried L. edodes.Entities:
Keywords: Lentinula edodes; gene promoter; heat-inducible element; volatile organosulfur compounds
Mesh:
Substances:
Year: 2019 PMID: 31197084 PMCID: PMC6632127 DOI: 10.3390/molecules24122223
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
The transcription factor binding sites predicted by SCPD.
| Element Name | Signal Sequence | Putative Function | Numbers |
|---|---|---|---|
| GCN4 | TGAATA | Transcriptional activator binding site | 17 |
| HSTF | TTCAACGAA | Involved in heat response | 7 |
| REB1 | CCACCCG | RNA polymerase IIbinding site | 1 |
| ECB | GGAAAAA | Early cell-cycle box element | 1 |
| ADR1 | TCTCC | Transcriptional activator binding site | 3 |
| GCR1 | CTTCC | Involved in decomposition of sugar | 7 |
| CuRE | GAGCAAA | Cu2+ response element | 1 |
| PHO4 | CACGTT | Activation of phosphate metabolism related genes | 2 |
| ABF1 | TCATTCCAGACG | Transcriptional activation of numerous genes | 1 |
| TBP | TATATA | TATA-Box binding protein | 2 |
| UASPHR | CTTCCT | Involved in DNA repair | 1 |
| STRE | AGGGG | Involved in stress response | 1 |
The transcription factor binding sites predicted by Yeastract.
| Element Name | Signal Sequence | Putative Function | Numbers |
|---|---|---|---|
| Ash1 | YTGAT | Transcriptional inhibition of | 9 |
| Cat8, Sip4 | NCCDTYNVNCCNG | Involved in the rearrangement of carbon metabolism | 1 |
| Crz1 | GNGGCKCA | Involved in calcineurin activation | 1 |
| Fkh1, Fkh2 | RYMAAYA | Involved in cell cycle and differentiation | 3 |
| Gat1, Gln3, Gzf3 | GATAAG | Involved in glyceride metabolism | 1 |
| Gcn4 | TGATTCA | Activating amino acid synthesis related genes | 1 |
| Gcr1 | CTTCC/CWTCC | Regulation of glycolytic related genes | 9 |
| Gis1, Msn2, Msn4, | AGGGG | Regulation of diphosphate pyrophosphate metabolism | 1 |
| Hsf1 | NTTCNNGAAN | HSTF binding site | 6 |
| Mac1 | TTTGCKCR | Cu2+ response element | 1 |
| Mot3 | AAGGWT | Involved in oxygen stress | 8 |
| Msn2, Msn4, Rph1 | CCCTC | Involved in stress response | 1 |
| Nrg1 | CCCTC | Regulates glucose metabolism and response to alkali | 2 |
| Pho4 | CACGTK | Response to phosphate limitation | 2 |
| Rgt1 | CGGANNA | Regulation of multiple glucose transporter genes | 1 |
| Rtg1, Rtg3 | GTCAC/GGTAC | Involved in interorganelle communication | 2 |
| Skn7 | GGCCAGA | Response to oxidative stress and osmoregulation | 1 |
| Stb5 | CGGNS | Regulating multidrug resistance and oxidative stress response | 15 |
| Tec1 | CATTCT | Regulating hyphal growth | 2 |
| Xbp1 | CTCGA | Cyclin gene transcriptional repression | 2 |
| Yap1 | TGACAA | Required for oxidative stress | 2 |
| Rim101 | TGCCAAG | Response to pH and in cell wall construction | 2 |
| Haa1 | SMGGSG | Involved in adaptation to weak acid stress | 3 |
| Com2 | ATAGGGT | Involved in adaptation to stress | 1 |
Figure 1(a) Mycelia of pCS-D0 transformants observed with an OLYMPUS BX51 fluorescence microscope compared to wild-type W1; images were taken with a 40× field of view. (b) Relative expression level of Csl before and after heat stress in wild-type W1. (c) The fluorescence intensity of pCS-D0 transformants; n = 3, p < 0.01.
Figure 2(a) HSTF binding sites in pCS predicted by SCPD. (b) Hsf1 binding sites in pCS predicted by Yeastract. (c) Construction of expression vectors with the full-length and truncated pCSs. (d) Mycelia of different transformants before and after heat stress observed with an OLYMPUS BX51 fluorescence microscope compared to wild-type W1; images were taken with a 40× field of view. (e) The fluorescence intensity of different transformants under 25 °C; n = 3, p < 0.01. (f) The fluorescence intensity of different transformants before and after heat stress; n = 3, p < 0.01.
Figure 3(a) Mycelia of pCS-D5 transformants before and after heat stress observed with an OLYMPUS BX51 fluorescence microscope; images were taken with a 40× field of view. (b) Mycelia of pCS-D2Mut transformants before and after heat stress observed with an OLYMPUS BX51 fluorescence microscope; images were taken with a 40× field of view. (c) The fluorescence intensity of pCS-D5 and pCS-D2Mut transformants before and after heat stress; n = 3, p < 0.01.
Figure 4Schematic model of the formation of volatile sulfide during the hot-air drying process. The dotted arrows indicate the result is being explored. ROS (reactive oxygen species).
Sequence of the primers.
| Primer Name | Primer Sequence(5′-3′) |
|---|---|
| pCS-R | ccttgctcaccatGTTCAGTTAATCAAGGGGGTGAGG |
| pCSD0-F | tctagaggatccccgggtaccATGGGTGAATATAGAGAGGCGG |
| pCSD1-F | tctagaggatccccgggtaccCTGTAGCAGATTCTGAAAAGATTGTAGC |
| pCSD2-F | tctagaggatccccgggtaccTTTCTAGAATCAGTTTGATTCAGGTCTG |
| pCSD3-F | tctagaggatccccgggtaccTGAGATCTCATGCTACAGTGTGCA |
| pCSD4-F | tctagaggatccccgggtaccAGGTAAGGAACTGTCCTTGATTTCA |
| pCSD5-F | tctagaggatccccgggtaccCAGTTTGATTCAGGTCTGATTCGG |
| EGFP-F | actgaacATGGTGAGCAAGGGCGAGG |
| EGFP-R | ccacctcaaacttcggaattcTTACTTGTACAGCTCGTCCATGCC |
| hph-F | TCGTCCATCACAGTTTGCC |
| hph-R | TGCCTCTAATCCCTTGCTC |
| qEGFP-F | AAGGGCATCGACTTCAAGGAG |
| qEGFP-R | GTTCACCTTGATGCCGTTCTTC |
| pCSD2Mut-F | GCCGAATTCTGGATAGAATCAGTTTGATT |
| pCSD2Mut-R | GGTACCTTACTTGTACAGCTCGTCCAT |